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2025

Zdouc, Mitja M and Blin, Kai and Louwen, Nico L L and Navarro, Jorge and Loureiro, Catarina and Bader, Chantal D and Bailey, Constance B and Barra, Lena and Booth, Thomas J and Bozhüyük, Kenan A J and Cediel-Becerra, José D D and Charlop-Powers, Zachary and Chevrette, Marc G and Chooi, Yit Heng and D'Agostino, Paul M and de Rond, Tristan and Del Pup, Elena and Duncan, Katherine R and Gu, Wenjia and Hanif, Novriyandi and Helfrich, Eric J N and Jenner, Matthew and Katsuyama, Yohei and Korenskaia, Aleksandra and Krug, Daniel and Libis, Vincent and Lund, George A and Mantri, Shrikant and Morgan, Kalindi D and Owen, Charlotte and Phan, Chin-Soon and Philmus, Benjamin and Reitz, Zachary L and Robinson, Serina L and Singh, Kumar Saurabh and Teufel, Robin and Tong, Yaojun and Tugizimana, Fidele and Ulanova, Dana and Winter, Jaclyn M and Aguilar, César and Akiyama, Daniel Y and Al-Salihi, Suhad A A and Alanjary, Mohammad and Alberti, Fabrizio and Aleti, Gajender and Alharthi, Shumukh A and Rojo, Mariela Y Arias and Arishi, Amr A and Augustijn, Hannah E and Avalon, Nicole E and Avelar-Rivas, J Abraham and Axt, Kyle K and Barbieri, Hellen B and Barbosa, Julio Cesar J and Barboza Segato, Lucas Gabriel and Barrett, Susanna E and Baunach, Martin and Beemelmanns, Christine and Beqaj, Dardan and Berger, Tim and Bernaldo-Agüero, Jordan and Bettenbühl, Sandra M and Bielinski, Vincent A and Biermann, Friederike and Borges, Ricardo M and Borriss, Rainer and Breitenbach, Milena and Bretscher, Kevin M and Brigham, Michael W and Buedenbender, Larissa and Bulcock, Brodie W and Cano-Prieto, Carolina and Capela, João and Carrion, Victor J and Carter, Riley S and Castelo-Branco, Raquel and Castro-Falcón, Gabriel and Chagas, Fernanda O and Charria-Girón, Esteban and Chaudhri, Ayesha Ahmed and Chaudhry, Vasvi and Choi, Hyukjae and Choi, Yukyung and Choupannejad, Roya and Chromy, Jakub and Donahey, Melinda S Chue and Collemare, Jérôme and Connolly, Jack A and Creamer, Kaitlin E and Crüsemann, Max and Cruz, Andres Arredondo and Cumsille, Andres and Dallery, Jean-Felix and Damas-Ramos, Luis Caleb and Damiani, Tito and de Kruijff, Martinus and Martín, Belén Delgado and Sala, Gerardo Della and Dillen, Jelle and Doering, Drew T and Dommaraju, Shravan R and Durusu, Suhan and Egbert, Susan and Ellerhorst, Mark and Faussurier, Baptiste and Fetter, Artem and Feuermann, Marc and Fewer, David P and Foldi, Jonathan and Frediansyah, Andri and Garza, Erin A and Gavriilidou, Athina and Gentile, Andrea and Gerke, Jennifer and Gerstmans, Hans and Gomez-Escribano, Juan Pablo and González-Salazar, Luz A and Grayson, Natalie E and Greco, Claudio and Gomez, Juan E Gris and Guerra, Sebastian and Flores, Shaday Guerrero and Gurevich, Alexey and Gutiérrez-García, Karina and Hart, Lauren and Haslinger, Kristina and He, Beibei and Hebra, Teo and Hemmann, Jethro L and Hindra, Hindra and Höing, Lars and Holland, Darren C and Holme, Jonathan E and Horch, Therese and Hrab, Pavlo and Hu, Jie and Huynh, Thanh-Hau and Hwang, Ji-Yeon and Iacovelli, Riccardo and Iftime, Dumitrita and Iorio, Marianna and Jayachandran, Sidharth and Jeong, Eunah and Jing, Jiayi and Jung, Jung J and Kakumu, Yuya and Kalkreuter, Edward and Kang, Kyo Bin and Kang, Sangwook and Kim, Wonyong and Kim, Geum Jin and Kim, Hyunwoo and Kim, Hyun Uk and Klapper, Martin and Koetsier, Robert A and Kollten, Cassandra and Kovács, Ákos T and Kriukova, Yelyzaveta and Kubach, Noel and Kunjapur, Aditya M and Kushnareva, Aleksandra K and Kust, Andreja and Lamber, Jessica and Larralde, Martin and Larsen, Niels J and Launay, Adrien P and Le, Ngoc-Thao-Hien and Lebeer, Sarah and Lee, Byung Tae and Lee, Kyungha and Lev, Katherine L and Li, Shu-Ming and Li, Yong-Xin and Licona-Cassani, Cuauhtémoc and Lien, Annette and Liu, Jing and Lopez, Julius Adam V and Machushynets, Nataliia V and Macias, Marla I and Mahmud, Taifo and Maleckis, Matiss and Martinez-Martinez, Añadir Maharai and Mast, Yvonne and Maximo, Marina F and McBride, Christina M and McLellan, Rose M and Bhatt, Khyati Mehta and Melkonian, Chrats and Merrild, Aske and Metsä-Ketelä, Mikko and Mitchell, Douglas A and Müller, Alison V and Nguyen, Giang-Son and Nguyen, Hera T and Niedermeyer, Timo H J and O'Hare, Julia H and Ossowicki, Adam and Ostash, Bohdan O and Otani, Hiroshi and Padva, Leo and Paliyal, Sunaina and Pan, Xinya and Panghal, Mohit and Parade, Dana S and Park, Jiyoon and Parra, Jonathan and Rubio, Marcos Pedraza and Pham, Huong T and Pidot, Sacha J and Piel, Jörn and Pourmohsenin, Bita and Rakhmanov, Malik and Ramesh, Sangeetha and Rasmussen, Michelle H and Rego, Adriana and Reher, Raphael and Rice, Andrew J and Rigolet, Augustin and Romero-Otero, Adriana and Rosas-Becerra, Luis Rodrigo and Rosiles, Pablo Y and Rutz, Adriano and Ryu, Byeol and Sahadeo, Libby-Ann and Saldanha, Murrel and Salvi, Luca and Sánchez-Carvajal, Eduardo and Santos-Medellin, Christian and Sbaraini, Nicolau and Schoellhorn, Sydney M and Schumm, Clemens and Sehnal, Ludek and Selem, Nelly and Shah, Anjali D and Shishido, Tania K and Sieber, Simon and Silviani, Velina and Singh, Garima and Singh, Hemant and Sokolova, Nika and Sonnenschein, Eva C and Sosio, Margherita and Sowa, Sven T and Steffen, Karin and Stegmann, Evi and Streiff, Alena B and Strüder, Alena and Surup, Frank and Svenningsen, Tiziana and Sweeney, Douglas and Szenei, Judit and Tagirdzhanov, Azat and Tan, Bin and Tarnowski, Matthew J and Terlouw, Barbara R and Rey, Thomas and Thome, Nicola U and Torres Ortega, Laura Rosina and Tørring, Thomas and Trindade, Marla and Truman, Andrew W and Tvilum, Marie and Udwary, Daniel W and Ulbricht, Christoph and Vader, Lisa and van Wezel, Gilles P and Walmsley, Max and Warnasinghe, Randika and Weddeling, Heiner G and Weir, Angus N M and Williams, Katherine and Williams, Sam E and Witte, Thomas E and Rocca, Steffaney M Wood and Yamada, Keith and Yang, Dong and Yang, Dongsoo and Yu, Jingwei and Zhou, Zhenyi and Ziemert, Nadine and Zimmer, Lukas and Zimmermann, Alina and Zimmermann, Christian and van der Hooft, Justin J J and Linington, Roger G and Weber, Tilmann and Medema, Marnix H (2025) MIBiG 4.0 : advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Research, 53 (D1). D678–D690. ISSN 1362-4962

2024

Poynton, Ella F and van Santen, Jeffrey A and Pin, Matthew and Contreras, Marla Macias and McMann, Emily and Parra, Jonathan and Showalter, Brandon and Zaroubi, Liana and Duncan, Katherine R and Linington, Roger G (2024) The Natural Products Atlas 3.0 : extending the database of microbially derived natural products. Nucleic Acids Research, 53 (D1). D691-D699. gkae1093. ISSN 1362-4962

2023

Terlouw, Barbara R. and Blin, Kai and Navarro-Muñoz, Jorge C. and Avalon, Nicole E. and Chevrette, Marc G. and Egbert, Susan and Lee, Sanghoon and Meijer, David and Recchia, Michael J.J. and Reitz, Zachary L. and van Santen, Jeffrey A. and Selem-Mojica, Nelly and Tørring, Thomas and Zaroubi, Liana and Alanjary, Mohammad and Aleti, Gajender and Aguilar, César and Al-Salihi, Suhad A.A. and Augustijn, Hannah E. and Avelar-Rivas, J. Abraham and Avitia-Domínguez, Luis A. and Barona-Gómez, Francisco and Bernaldo-Agüero, Jordan and Bielinski, Vincent A. and Biermann, Friederike and Booth, Thomas J. and Carrion Bravo, Victor J. and Castelo-Branco, Raquel and Chagas, Fernanda O. and Cruz-Morales, Pablo and Du, Chao and Duncan, Katherine R. and Gavriilidou, Athina and Gayrard, Damien and Gutiérrez-García, Karina and Haslinger, Kristina and Helfrich, Eric J.N. and van der Hooft, Justin J.J. and Jati, Afif P. and Kalkreuter, Edward and Kalyvas, Nikolaos and Kang, Kyo B. and Kautsar, Satria and Kim, Wonyong and Kunjapur, Aditya M. and Li, Yong-Xin and Lin, Geng-Min and Loureiro, Catarina and Louwen, Joris J.R. and Louwen, Nico L.L. and Lund, George and Parra, Jonathan and Philmus, Benjamin and Pourmohsenin, Bita and Pronk, Lotte J.U. and Rego, Adriana and Balaya Rex, Devasahayam Arokia and Robinson, Serina and Rosas-Becerra, L. Rodrigo and Roxborough, Eve T. and Schorn, Michelle A. and Scobie, Darren J. and Singh, Kumar Saurabh and Sokolova, Nika and Tang, Xiaoyu and Udwary, Daniel and Vigneshwari, Aruna and Vind, Kristiina and Vromans, Sophie P.J.M. and Waschulin, Valentin and Williams, Sam E. and Winter, Jaclyn M. and Witte, Thomas E. and Xie, Huali and Yang, Dong and Yu, Jingwei and Zdouc, Mitja and Zhong, Zheng and Collemare, Jérôme and Linington, Roger G. and Weber, Tilmann and Medema, Marnix H. (2023) MIBiG 3.0 : a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research, 51 (D1). D603-D610. gkac1049. ISSN 1362-4962

2022

van Santen, Jeffrey A. and Poynton, Ella F. and Iskakova, Dasha and McMann, Emily and Alsup, Tyler A. and Clark, Trevor N. and Fergusson, Claire H and Fewer, David P and Hughes, Alison H. and McCadden, Caitlin A. and Parra, Jonathan and Soldatou, Sylvia and Rudolf, Jeffrey D and Janssen, Elisabeth M.-L. and Duncan, Katherine R. and Linington, Roger G. (2022) The Natural Products Atlas 2.0 : a database of microbially-derived natural products. Nucleic Acids Research, 50 (D1). D1317-D1323. ISSN 1362-4962

2020

Horesh, Gal and Fino, Cinzia and Harms, Alexander and Dorman, Matthew J. and Parts, Leopold and Gerdes, Kenn and Heinz, Eva and Thomson, Nicholas R. (2020) Type II and type IV toxin–antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population. Nucleic Acids Research, 48 (8). pp. 4357-4370. ISSN 1362-4962

2018

Horesh, Gal and Harms, Alexander and Fino, Cinzia and Parts, Leopold and Gerdes, Kenn and Heinz, Eva and Thomson, Nicholas Robert (2018) SLING : a tool to search for linked genes in bacterial datasets. Nucleic Acids Research, 46 (21). e128. ISSN 1362-4962

Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2018) riboSeed : leveraging prokaryotic genomic architecture to assemble across ribosomal regions. Nucleic Acids Research, 46 (11). e68. ISSN 1362-4962

Jobbins, Andrew M and Reichenbach, Linus F and Lucas, Christian M and Hudson, Andrew J and Burley, Glenn A and Eperon, Ian C (2018) The mechanisms of a mammalian splicing enhancer. Nucleic Acids Research. ISSN 1362-4962

Padroni, Giacomo and Parkinson, John A. and Fox, Keith R. and Burley, Glenn A. (2018) Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides. Nucleic Acids Research, 46 (1). pp. 42-53. ISSN 1362-4962

2017

Weldon, Carika and Dacanay, Justine G. and Gokhale, Vijay and Boddupally, Peda Venkat L. and Behm-Ansmant, Isabelle and Burley, Glenn A. and Branlant, Christiane and Hurley, Laurence H. and Dominguez, Cyril and Eperon, Ian C. (2017) Specific G-quadruplex ligands modulate the alternative splicing of Bcl-X. Nucleic Acids Research, 46 (2). 886–896. ISSN 1362-4962

2016

Maiques, Elisa and Quiles-Puchalt, Nuria and Donderis, Jorge and Ciges-Tomas, J. Rafael and Alite, Christian and Bowring, Janine Z. and Humphrey, Suzanne and Penadés, José R. and Marina, Alberto (2016) Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party. Nucleic Acids Research, 44 (11). pp. 5457-5469. ISSN 1362-4962

2013

Devaurs, Didier and Bouard, Léa and Vaisset, Marc and Zanon, Christophe and Al-Bluwi, Ibrahim and Iehl, Romain and Siméon, Thierry and Cortés, Juan (2013) MoMA-LigPath : a web server to simulate protein-ligand unbinding. Nucleic Acids Research, 41 (W1). W297-W302. ISSN 1362-4962

Paradzik, Tina and Ivic, Nives and Filic, Zelimira and Manjasetty, Babu and Herron, Paul and Luic, Marija and Vujaklija, Dusica (2013) Structure–function relationships of two paralogous single-stranded DNA-binding proteins from Streptomyces coelicolor : implication of SsbB in chromosome segregation during sporulation. Nucleic Acids Research, 41 (6). pp. 3659-3672. ISSN 1362-4962

2010

Cock, Peter J. A. and Fields, Christopher J. and Goto, Naohisa and Heuer, Michael L. and Rice, Peter M. (2010) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research, 38 (6). pp. 1767-1771. ISSN 1362-4962

Tucker, Nick and Ghosh, T. and Bush, M. and Zhang, X. and Dixon, Ray (2010) Essential roles of three enhancer sites in sigma-54-dependent transcription by the nitric oxide sensing regulatory protein NorR. Nucleic Acids Research, 38 (4). pp. 1182-1194. ISSN 1362-4962

2009

Buff, M.C.R. and Schäfer, F. and Wulffen, Bernhard and Müller, Jens and Pötzsch, Bernd and Heckel, A. and Mayer, G. (2009) Dependence of aptamer activity on opposed terminal extensions: improvement of light-regulation efficiency. Nucleic Acids Research, 38 (6). pp. 2111-2118. ISSN 1362-4962

2007

Yang, Jian and Chen, Lihong and Sun, Lilian and Jin, Qi and Yu, J. (2007) VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Research, 36. D539-D542. ISSN 1362-4962

Macaskill, A. and Chernonosov, A.A and Koval, V.V and Lukyanets, E.A. and Fedorova, O.S. and Smith, W.E. and Faulds, K. and Graham, D. (2007) Quantitative surface-enhanced resonance raman scattering of phthalocyanine labelled oligonucleotides. Nucleic Acids Research, 35 (6). E42. ISSN 1362-4962

Dougan, Jennifer A. and Karlsson, Camilla and Smith, W. Ewen and Graham, Duncan (2007) Enhanced oligonucleotide-nanoparticle conjugate stability using thioctic acid modified oligonucleotides. Nucleic Acids Research, 35 (11). pp. 3668-3675. ISSN 1362-4962

2006

Khodakaramian, G. and Gust, B. and Lissenden, S. and Moir, L. and Hoskisson, P. and Chater, K.F. and Smith, M.C.M. (2006) Expression of cre recombinase during transient phage infection permits efficeient marker removal in streptomyces. Nucleic Acids Research, 34. E20. ISSN 1362-4962

2004

James, P.L. and Merkina, E.E. and Khalaf, A.I. and Suckling, C.J. and Waigh, R.D. and Brown, T. and Fox, K.R. (2004) DNA sequence recognition by an isopropyl substituted thiazole polyamide. Nucleic Acids Research, 32 (11). pp. 3410-3417. ISSN 1362-4962

Herron, P.R. and Hughes, G. and Chandra, G. and Fielding, S. and Dyson, P.J. (2004) Transposon express, a software application to report the identity of insertions obtained by comprehensive transposon mutagenesis of sequenced genomes: analysis of the preference for in vitro tn5 transposition into gC-rich dNA. Nucleic Acids Research, 32 (14). E113. ISSN 1362-4962

Rigali, S. and Schlicht, M. and Hoskisson, P. and Northaft, H. and Merzbacher, M. and Joris, B. and Titgemeyer, F. (2004) Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships. Nucleic Acids Research, 32 (11). pp. 3418-3426. ISSN 1362-4962

2002

Qi, J. and Xu, J. and Hou, Y. and Yu, J. (2002) Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coliK12 and O157. Nucleic Acids Research, 30 (20). pp. 4432-41. ISSN 1362-4962

1992

Mackellar, C. and Graham, D. and Will, D.W. and Burgess, S. and Brown, T. (1992) Synthesis and physical properties of anti-HIV antisense oligonucleotides bearing terminal lipophilic groups. Nucleic Acids Research, 20 (13). pp. 3411-3417. ISSN 1362-4962

1990

Rowan, E.G. and Ducancel, F. and Doljansky, Y. and Harvey, A.L. and Boulain, J.C. and Menez, A. (1990) Nucleotide-sequence encoding a synergistic-like protein from the venom glands of Dendroaspis angusticeps. Nucleic Acids Research, 18 (6). p. 1639. ISSN 1362-4962