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2024

Poynton, Ella F and van Santen, Jeffrey A and Pin, Matthew and Contreras, Marla Macias and McMann, Emily and Parra, Jonathan and Showalter, Brandon and Zaroubi, Liana and Duncan, Katherine R and Linington, Roger G (2024) The Natural Products Atlas 3.0 : extending the database of microbially derived natural products. Nucleic Acids Research. gkae1093. ISSN 1362-4962

2023

Terlouw, Barbara R. and Blin, Kai and Navarro-Muñoz, Jorge C. and Avalon, Nicole E. and Chevrette, Marc G. and Egbert, Susan and Lee, Sanghoon and Meijer, David and Recchia, Michael J.J. and Reitz, Zachary L. and van Santen, Jeffrey A. and Selem-Mojica, Nelly and Tørring, Thomas and Zaroubi, Liana and Alanjary, Mohammad and Aleti, Gajender and Aguilar, César and Al-Salihi, Suhad A.A. and Augustijn, Hannah E. and Avelar-Rivas, J. Abraham and Avitia-Domínguez, Luis A. and Barona-Gómez, Francisco and Bernaldo-Agüero, Jordan and Bielinski, Vincent A. and Biermann, Friederike and Booth, Thomas J. and Carrion Bravo, Victor J. and Castelo-Branco, Raquel and Chagas, Fernanda O. and Cruz-Morales, Pablo and Du, Chao and Duncan, Katherine R. and Gavriilidou, Athina and Gayrard, Damien and Gutiérrez-García, Karina and Haslinger, Kristina and Helfrich, Eric J.N. and van der Hooft, Justin J.J. and Jati, Afif P. and Kalkreuter, Edward and Kalyvas, Nikolaos and Kang, Kyo B. and Kautsar, Satria and Kim, Wonyong and Kunjapur, Aditya M. and Li, Yong-Xin and Lin, Geng-Min and Loureiro, Catarina and Louwen, Joris J.R. and Louwen, Nico L.L. and Lund, George and Parra, Jonathan and Philmus, Benjamin and Pourmohsenin, Bita and Pronk, Lotte J.U. and Rego, Adriana and Balaya Rex, Devasahayam Arokia and Robinson, Serina and Rosas-Becerra, L. Rodrigo and Roxborough, Eve T. and Schorn, Michelle A. and Scobie, Darren J. and Singh, Kumar Saurabh and Sokolova, Nika and Tang, Xiaoyu and Udwary, Daniel and Vigneshwari, Aruna and Vind, Kristiina and Vromans, Sophie P.J.M. and Waschulin, Valentin and Williams, Sam E. and Winter, Jaclyn M. and Witte, Thomas E. and Xie, Huali and Yang, Dong and Yu, Jingwei and Zdouc, Mitja and Zhong, Zheng and Collemare, Jérôme and Linington, Roger G. and Weber, Tilmann and Medema, Marnix H. (2023) MIBiG 3.0 : a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research, 51 (D1). D603-D610. gkac1049. ISSN 1362-4962

2022

van Santen, Jeffrey A. and Poynton, Ella F. and Iskakova, Dasha and McMann, Emily and Alsup, Tyler A. and Clark, Trevor N. and Fergusson, Claire H and Fewer, David P and Hughes, Alison H. and McCadden, Caitlin A. and Parra, Jonathan and Soldatou, Sylvia and Rudolf, Jeffrey D and Janssen, Elisabeth M.-L. and Duncan, Katherine R. and Linington, Roger G. (2022) The Natural Products Atlas 2.0 : a database of microbially-derived natural products. Nucleic Acids Research, 50 (D1). D1317-D1323. ISSN 1362-4962

2020

Horesh, Gal and Fino, Cinzia and Harms, Alexander and Dorman, Matthew J. and Parts, Leopold and Gerdes, Kenn and Heinz, Eva and Thomson, Nicholas R. (2020) Type II and type IV toxin–antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population. Nucleic Acids Research, 48 (8). pp. 4357-4370. ISSN 1362-4962

2018

Horesh, Gal and Harms, Alexander and Fino, Cinzia and Parts, Leopold and Gerdes, Kenn and Heinz, Eva and Thomson, Nicholas Robert (2018) SLING : a tool to search for linked genes in bacterial datasets. Nucleic Acids Research, 46 (21). e128. ISSN 1362-4962

Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2018) riboSeed : leveraging prokaryotic genomic architecture to assemble across ribosomal regions. Nucleic Acids Research, 46 (11). e68. ISSN 1362-4962

Jobbins, Andrew M and Reichenbach, Linus F and Lucas, Christian M and Hudson, Andrew J and Burley, Glenn A and Eperon, Ian C (2018) The mechanisms of a mammalian splicing enhancer. Nucleic Acids Research. ISSN 1362-4962

Padroni, Giacomo and Parkinson, John A. and Fox, Keith R. and Burley, Glenn A. (2018) Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides. Nucleic Acids Research, 46 (1). pp. 42-53. ISSN 1362-4962

2017

Weldon, Carika and Dacanay, Justine G. and Gokhale, Vijay and Boddupally, Peda Venkat L. and Behm-Ansmant, Isabelle and Burley, Glenn A. and Branlant, Christiane and Hurley, Laurence H. and Dominguez, Cyril and Eperon, Ian C. (2017) Specific G-quadruplex ligands modulate the alternative splicing of Bcl-X. Nucleic Acids Research, 46 (2). 886–896. ISSN 1362-4962

2016

Maiques, Elisa and Quiles-Puchalt, Nuria and Donderis, Jorge and Ciges-Tomas, J. Rafael and Alite, Christian and Bowring, Janine Z. and Humphrey, Suzanne and Penadés, José R. and Marina, Alberto (2016) Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party. Nucleic Acids Research, 44 (11). pp. 5457-5469. ISSN 1362-4962

2013

Devaurs, Didier and Bouard, Léa and Vaisset, Marc and Zanon, Christophe and Al-Bluwi, Ibrahim and Iehl, Romain and Siméon, Thierry and Cortés, Juan (2013) MoMA-LigPath : a web server to simulate protein-ligand unbinding. Nucleic Acids Research, 41 (W1). W297-W302. ISSN 1362-4962

Paradzik, Tina and Ivic, Nives and Filic, Zelimira and Manjasetty, Babu and Herron, Paul and Luic, Marija and Vujaklija, Dusica (2013) Structure–function relationships of two paralogous single-stranded DNA-binding proteins from Streptomyces coelicolor : implication of SsbB in chromosome segregation during sporulation. Nucleic Acids Research, 41 (6). pp. 3659-3672. ISSN 1362-4962

2010

Cock, Peter J. A. and Fields, Christopher J. and Goto, Naohisa and Heuer, Michael L. and Rice, Peter M. (2010) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research, 38 (6). pp. 1767-1771. ISSN 1362-4962

Tucker, Nick and Ghosh, T. and Bush, M. and Zhang, X. and Dixon, Ray (2010) Essential roles of three enhancer sites in sigma-54-dependent transcription by the nitric oxide sensing regulatory protein NorR. Nucleic Acids Research, 38 (4). pp. 1182-1194. ISSN 1362-4962

2009

Buff, M.C.R. and Schäfer, F. and Wulffen, Bernhard and Müller, Jens and Pötzsch, Bernd and Heckel, A. and Mayer, G. (2009) Dependence of aptamer activity on opposed terminal extensions: improvement of light-regulation efficiency. Nucleic Acids Research, 38 (6). pp. 2111-2118. ISSN 1362-4962

2007

Yang, Jian and Chen, Lihong and Sun, Lilian and Jin, Qi and Yu, J. (2007) VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Research, 36. D539-D542. ISSN 1362-4962

Macaskill, A. and Chernonosov, A.A and Koval, V.V and Lukyanets, E.A. and Fedorova, O.S. and Smith, W.E. and Faulds, K. and Graham, D. (2007) Quantitative surface-enhanced resonance raman scattering of phthalocyanine labelled oligonucleotides. Nucleic Acids Research, 35 (6). E42. ISSN 1362-4962

Dougan, Jennifer A. and Karlsson, Camilla and Smith, W. Ewen and Graham, Duncan (2007) Enhanced oligonucleotide-nanoparticle conjugate stability using thioctic acid modified oligonucleotides. Nucleic Acids Research, 35 (11). pp. 3668-3675. ISSN 1362-4962

2006

Khodakaramian, G. and Gust, B. and Lissenden, S. and Moir, L. and Hoskisson, P. and Chater, K.F. and Smith, M.C.M. (2006) Expression of cre recombinase during transient phage infection permits efficeient marker removal in streptomyces. Nucleic Acids Research, 34. E20. ISSN 1362-4962

2004

James, P.L. and Merkina, E.E. and Khalaf, A.I. and Suckling, C.J. and Waigh, R.D. and Brown, T. and Fox, K.R. (2004) DNA sequence recognition by an isopropyl substituted thiazole polyamide. Nucleic Acids Research, 32 (11). pp. 3410-3417. ISSN 1362-4962

Herron, P.R. and Hughes, G. and Chandra, G. and Fielding, S. and Dyson, P.J. (2004) Transposon express, a software application to report the identity of insertions obtained by comprehensive transposon mutagenesis of sequenced genomes: analysis of the preference for in vitro tn5 transposition into gC-rich dNA. Nucleic Acids Research, 32 (14). E113. ISSN 1362-4962

Rigali, S. and Schlicht, M. and Hoskisson, P. and Northaft, H. and Merzbacher, M. and Joris, B. and Titgemeyer, F. (2004) Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships. Nucleic Acids Research, 32 (11). pp. 3418-3426. ISSN 1362-4962

2002

Qi, J. and Xu, J. and Hou, Y. and Yu, J. (2002) Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coliK12 and O157. Nucleic Acids Research, 30 (20). pp. 4432-41. ISSN 1362-4962

1992

Mackellar, C. and Graham, D. and Will, D.W. and Burgess, S. and Brown, T. (1992) Synthesis and physical properties of anti-HIV antisense oligonucleotides bearing terminal lipophilic groups. Nucleic Acids Research, 20 (13). pp. 3411-3417. ISSN 1362-4962

1990

Rowan, E.G. and Ducancel, F. and Doljansky, Y. and Harvey, A.L. and Boulain, J.C. and Menez, A. (1990) Nucleotide-sequence encoding a synergistic-like protein from the venom glands of Dendroaspis angusticeps. Nucleic Acids Research, 18 (6). p. 1639. ISSN 1362-4962