Browse by Author or creator

2024

Green, Sarah and Cooke, David E.L. and Barwell, Louise and Purse, Bethan and Cock, Peter and Frederickson-Matika, Debra and Randall, Eva and Keillor, Beatrix and Pritchard, Leighton and Thorpe, Peter and Pettit, Tim and Schlenzig, Alexandra and Barbrook, Jane (2024) The prevalence of Phytophthora in British plant nurseries : high-risk hosts and substrates and opportunities to influence practice. Plant Pathology. ISSN 1365-3059 (In Press)

2023

Cock, Peter and Cooke, David E. L. and Thorpe, Peter and Pritchard, Leighton (2023) THAPBI PICT - a fast, cautious, and accurate metabarcoding analysis pipeline. PeerJ, 11. e15648. ISSN 2167-8359

Schiffer-Forsyth, Kadiatou and Frederickson Matika, Debra and Hedley, Pete E. and Cock, Peter J.A. and Green, Sarah (2023) Phytophthora in horticultural nursery green waste : a risk to plant health. Horticulturae, 9 (6). 616. ISSN 2311-7524

2021

Green, Sarah and Cooke, David E. L. and Dunn, Mike and Barwell, Louise and Purse, Bethan and Chapman, Daniel S. and Valatin, Gregory and Schlenzig, Alexandra and Barbrook, Jane and Pettit, Tim and Price, Colin and Pérez-Sierra, Ana and Frederickson-Matika, Debbie and Pritchard, Leighton and Thorpe, Peter and Cock, Peter and Randall, Eva and Keillor, Beatrix and Marzano, Mariella (2021) Phyto-threats : addressing threats to UK forests and woodlands from phytophthora; identifying risks of spread in trade and methods for mitigation. Forests, 12 (12). 1617. ISSN 1999-4907

2019

Pritchard, Leighton and Cock, Peter and Thorpe, Peter and Clark, Beatrix and Randall, Eva and Green, Sarah and Cooke, David (2019) We need to talk about metabarcoding : identification of Phytophthora species in environmental samples. In: IS-MPMI XVIII 2019 Congress, 2019-07-14 - 2019-07-18, SEC Centre.

2016

Vicente, Claudia S.L. and Nascimento, Francisco X. and Ikuyo, Yoriko and Cock, Peter J.A. and Mota, Manuel and Hasegawa, Koichi (2016) The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus. BMC Genomics, 17. 301. ISSN 1471-2164

2013

Jupe, Florian and Witek, Kamil and Verweij, Walter and Śliwka, Jadwiga and Pritchard, Leighton and Etherington, Graham J. and Maclean, Dan and Cock, Peter J. and Leggett, Richard M. and Bryan, Glenn J. and Cardle, Linda and Hein, Ingo and Jones, Jonathan D.G. (2013) Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal, 76 (3). pp. 530-544. ISSN 0960-7412

Cock, Peter J.A. and Grüning, Björn A. and Paszkiewicz, Konrad and Pritchard, Leighton (2013) Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PeerJ. e167. ISSN 2167-8359

2012

McNally, R. Ryan and Toth, Ian K. and Cock, Peter J. A. and Pritchard, Leighton and Hedley, Pete E. and Morris, Jenny A. and Zhao, Youfu and Sundin, George W. (2012) Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology, 13 (2). pp. 160-173. ISSN 1464-6722

Jupe, Florian and Pritchard, Leighton and Etherington, Graham J and MacKenzie, Katrin and Cock, Peter JA and Wright, Frank and Sharma, Sanjeev Kumar and Bolser, Dan and Bryan, Glenn J and Jones, Jonathan DG and Hein, Ingo (2012) Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics, 13. 75. ISSN 1471-2164

2011

Kikuchi, Taisei and Cotton, James A. and Dalzell, Jonathan J. and Hasegawa, Koichi and Kanzaki, Natsumi and McVeigh, Paul and Takanashi, Takuma and Tsai, Isheng J. and Assefa, Samuel A. and Cock, Peter J.A. and Da Otto, Thomasn and Hunt, Martin and Reid, Adam J. and Sanchez-Flores, Alejandro and Tsuchihara, Kazuko and Yokoi, Toshiro and Larsson, Mattias C. and Miwa, Johji and Maule, Aaron G. and Sahashi, Norio and Jones, John T. and Berriman, Matthew (2011) Genomic insights into the origin of parasitism in the emerging plant pathogen bursaphelenchus xylophilus. PLOS Pathogens, 7 (9). e1002219. ISSN 1553-7366

2010

Cock, Peter J. A. and Fields, Christopher J. and Goto, Naohisa and Heuer, Michael L. and Rice, Peter M. (2010) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research, 38 (6). pp. 1767-1771. ISSN 1362-4962

2009

Cock, Peter J. A. and Antao, Tiago and Chang, Jeffrey T. and Chapman, Brad A. and Cox, Cymon J. and Dalke, Andrew and Friedberg, Iddo and Hamelryck, Thomas and Kauff, Frank and Wilczynski, Bartek and De hoon, Michiel J. L. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25 (11). pp. 1422-1423. ISSN 1367-4811