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Li, Yahui and Sapermsap, Natakorn and Yu, Jun and Tian, Jinshou and Chen, Yu and Li, David Day-Uei (2021) Histogram clustering for rapid time-domain fluorescence lifetime image analysis. Biomedical Optics Express, 12 (7). pp. 4293-4307. ISSN 2156-7085

Sapermsap, Natakorn and Li, David Day-Uei and Al-Hemedawi, Ryath and Li, Yahui and Yu, Jun and Birch, David and Chen, Yu (2020) A rapid analysis platform for investigating the cellular locations of bacteria using two-photon fluorescence lifetime imaging microscopy. Methods and Applications in Fluorescence, 8 (3). 034001. ISSN 2050-6120

Radhi, Ohood A. and Davidson, Scott and Scott, Fiona and Zeng, Run X. and Jones, D. Heulyn and Tomkinson, Nick C. O. and Yu, Jun and Chan, Edmond Y.W. (2019) Inhibition of the ULK1 protein complex suppresses Staphylococcus-induced autophagy and cell death. Journal of Biological Chemistry, 294. pp. 14289-14307. ISSN 1083-351X

Xu, Dan and Liao, Chongbing and Zhang, Bing and Tolbert, W. David and He, Wangxiao and Dai, Zhijun and Zhang, Wei and Yuan, Weirong and Pazgier, Marzena and Liu, Jiankang and Yu, Jun and Sansonetti, Philippe J. and Bevins, Charles L. and Shao, Yongping and Lu, Wuyuan (2018) Human enteric a-defensin 5 promotes shigella infection by enhancing bacterial adhesion and invasion. Immunity, 48 (6). pp. 1233-1244. ISSN 1097-4180

Mirza, Zainulabedeen R. M. H. and Hasan, Thaer and Seidel, Veronique and Yu, Jun (2018) Geraniol as a novel antivirulence agent against bacillary dysentery-causing Shigella sonnei. Virulence, 9 (1). pp. 450-455. ISSN 2150-5608

Zhang, Yinan and Chen, Yu and Yu, Jun and Birch, David JS (2017) A surface plasmon enhanced FLIM-FRET imaging approach based on Au nanoparticles. Medical Devices and Diagnostic Engineering, 2 (1). pp. 78-82. ISSN 2399-6854

Mahmoud, Rasha Y. and Li, Wenqin and Eldomany, Ramadan A. and Emara, Mohamed and Yu, Jun (2017) The Shigella ProU system is required for osmotic tolerance and virulence. Virulence, 8 (4). pp. 362-374. 2016VIRULENCE0129R. ISSN 2150-5608

Wei, Guoke and Yu, Jun and Wang, Jinliang and Gu, Peng and Birch, David J.S. and Chen, Yu (2016) Hairpin DNA functionalized gold nanorods for mRNA detection in homogenous solution. Journal of Biomedical Optics, 21 (9). 097001. ISSN 1083-3668

Wei, Guoke and Simionesie, Dorin and Sefcik, Jan and Sutter, Jens U. and Xue, Qingjiang and Yu, Jun and Wang, Jinliang and Birch, David J.S. and Chen, Yu (2015) Revealing the photophysics of gold-nanobeacons via time-resolved fluorescence spectroscopy. Optics Letters, 40 (24). 5738–5741. ISSN 0146-9592

Mahmoud, Rasha Y. and Stones, Daniel Henry and Li, Wenqin and Emara, Mohamed and Eldomany, R A and Wang, Depu and Wang, Yili and Krachler, Anne Marie and Yu, Jun (2015) The multivalent adhesion molecule SSO1327 plays a key role in Shigella sonnei pathogenesis : SSO1327 is an adhesin required for S. sonnei pathogenesis. Molecular Microbiology. ISSN 0950-382X

Zhang, Yinan and Wei, Guoke and Yu, Jun and Birch, David J. S. and Chen, Yu (2015) Surface plasmon enhanced energy transfer between gold nanorods and fluorophores : application to endosytosis study and RNA detection. Faraday Discussions, 178. pp. 383-394. ISSN 1359-6640

Mazi, Waleed and Sangal, Vartul and Saeed, Amir and Sandstom, Gunnar and Weill, François-Xavier and Yu, Jun (2015) Rapid genotyping of Shigella sonnei using multiplex high resolution melting. Journal of Clinical Microbiology, 53 (7). pp. 1-2. JCM.00874-15. ISSN 0095-1137

Mazi, Waleed and Sangal, Vartul and Sandstom, Gunnar and Saeed, Amir and Yu, Jun (2015) Evaluation of spa-typing of methicillin-resistant Staphylococcus aureus using high-resolution melting analysis. International Journal of Infectious Diseases. pp. 1-18. S1201-9712(15)00109-5. ISSN 1201-9712

Xu, Dan and Wang, Depu and Yang, Xiaofeng and Cao, Meng and Yu, Jun and Yili, Wang (2014) Fusion of HPV L1 into Shigella surface IcsA : a new approach in developing live attenuated Shigella-HPV vaccine. Antiviral Research, 102. pp. 61-69. ISSN 1872-9096

Xu, Dan and Yang, Xiaofeng and Wang, Depu and Yu, Jun and Yili, Wang (2014) Surface display of the HPV L1 capsid protein by the autotransporter Shigella IcsA. Journal of Microbiology, 52 (1). pp. 77-82. ISSN 1976-3794

Sangal, Vartul and Holt, K.E. and Yuan, J and Brown, D.J. and Filliol-Toutain, I. and Weill, François-Xavier and Kim, D.W. and da Silveira, W.D. and Pickard, D. and Thomson, N.R. and Parkhill, J. and Yu, Jun (2013) Global phylogeny of Shigella sonnei from limited single nucleotide polymorphisms and development of a rapid and cost-effective SNP-typing scheme for strain identification by high resolution melting : rapid SNP-typing S. sonnei. Journal of Clinical Microbiology. ISSN 0095-1137

Sangal, Vartul and Girvan, E. Kirsty and Jadhav, Sagar and Lawes, Timothy and Robb, Andrew and Vali, Leila and Edwards, Giles F. and Yu, Jun and Gould, Ian M. (2012) Impacts of a long-term programme of active surveillance and chlorhexidine baths on the clinical and molecular epidemiology of meticillin-resistant Staphylococcus aureus (MRSA) in an Intensive Care Unit in Scotland. International Journal of Antimicrobial Agents, 40 (4). 323–331. ISSN 0924-8579

Holt, K. and Baker, Stephen and Weill, François-Xavier and Holmes, Edward C. and Kitchen, Andrew and Yu, Jun and Sangal, Vartul and Brown, Derek J. and Coia, John E. and Kim, Dong Wook and Choi, Seon Young and Kim, Su Hee and da Silveira, Wanderley D. and Pickard, Derek J. and Farrar, Jeremy J. and Parkhill, Julian and Dougan, Gordon and Thomson, Nicholas R. (2012) Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nature Genetics, 44 (9). 1056–1059. ISSN 1061-4036

Zhang, Yinan and Xu, Dan and Li, Wenqin and Yu, Jun and Chen, Yu (2012) Effect of size, shape, and surface modification on cytotoxicity of gold nanoparticles to human Hep-2 and canine MDCK cells. Journal of Nanomaterials, 2012. 375496.

Sangal, V. and Girvan, K. and Jadhav, S. and Vali, L. and Edwards, G. F. S. and Yu, J. and Gould, I. M. (2011) Molecular characterization of methicillin-resistant staphylococcus aureus from intensive care unit in Aberdeen Royal Infirmary, Scotland : lesson in microbiology & infection control. Journal of Infection, 63 (6). E38-E39. ISSN 0163-4453

Xu, Dan and Saeed, Amir and Wang, Yili and Seidel, Veronique and Sandstrome, Gunnar and Yu, Jun (2011) Natural products modulate Shigella–host-cell interaction. Journal of Medical Microbiology, 60 (11). pp. 1626-1632. ISSN 0022-2615

Wang, Wei and Hale, Christine and Goulding, Dave and Haslam, Stuart and Tissot, Berangere and Lindsay, Christopher and Michell, Stephen and Titball, Rick and Yu, Jun and Toribio, Ana Luisa and Rossi, Raffaella and Dell, Anne and Bradley, Allan and Dougan, Gordon (2011) Mannosidase 2, alpha 1 deficiency is associated with ricin resistance in embryonic stem (ES) cells. PLoS One, 6 (8). e22993. ISSN 1932-6203

Zhang, Y. and Yu, Jun and Birch, David and Chen, Yu (2010) Gold nanorods for fluorescence lifetime imaging in biology. Journal of Biomedical Optics, 15 (2). 20504. ISSN 1083-3668

Yu, J. and Rossi, R. and Hale, C. and Goulding, D. and Dougan, G. (2009) Interaction of enteric bacterial pathogens with murine embryonic stem cells. Infection and Immunity, 77 (2). pp. 585-597. ISSN 0019-9567

Shah, Walayat and Hongwei, Chen and Jin, Zheng and Lifang, Dong and Jun, Yu and Yili, Wang (2009) The prevalence of human papillomavirus type 58 in chinese patients with cervical carcinoma and its influence on survival. Clinical Oncology, 21 (10). pp. 768-774. ISSN 0936-6555

Yang, Jian and Chen, Lihong and Sun, Lilian and Jin, Qi and Yu, J. (2007) VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Research, 36. D539-D542. ISSN 1362-4962

Yang, J. and Nie, H. and Chen, L. and Zhang, X. and Yang, F. and Xu, x. and Zhu, Y. and Yu, J. and Qi, J. (2006) Revisiting the molecular evolutionary history of shigella spp. Journal of Molecular Evolution, 64. pp. 71-79. ISSN 0022-2844

Lucchini, Sacha and Liu, Hong and Jin, Qi and Hinton, Jay C. D. and Yu, Jun (2005) Transcriptional adaptation of shigella flexneri during infection of macrophages and epithelial cells : insights into the strategies of a cytosolic bacterial pathogen. Infection and Immunity, 73 (1). pp. 88-102. ISSN 0019-9567

Qi, J. and Xu, J. and Hou, Y. and Yu, J. (2002) Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coliK12 and O157. Nucleic Acids Research, 30 (20). pp. 4432-41. ISSN 1362-4962

Book Section

Lee, Dennis and Yue, Hong and Yu, Jun and Marshall, Stephen; Kariwala, Vinay and Samavedham, Lakshminarayanan and Braatz, Richard D, eds. (2012) Identification of complex biological network classes using extended correlation analysis. In: Advanced control of chemical processes. International Federation of Automatic Control (IFAC), SGP, pp. 457-462. ISBN 9783902823052

Zhang, Y. and Yu, J. and Birch, D. J. S. and Chen, Y.; Achilefu, S. and Raghavachari, R., eds. (2011) Gold nanorods for applications in biological imaging. In: Reporters, markers, dyes, nanoparticles and molecular probes for biomedical applications III. Proceedings of SPIE . SPIE, USA. ISBN 9780819484475

Yang, Jian and Sangal, Vartul and Jin, Qi and Yu, Jun; Fratamico, Pina and Liu, Yanhong and Kathariou, Sophia, eds. (2010) Shigella genomes: a tale of convergent evolution and specialization through IS-expansion and genome reduction. In: Genomes of Foodborne and Waterborne Pathogens. ASM Press. ISBN 978-1-55581-457-1

Wark, Alastair and Yu, Jun and Lindsay, C. D. and Nativo, Paola and Graham, Duncan; (2009) Methods for nanoparticle labeling of ricin and effect on toxicity. In: Methods for nanoparticle labeling of ricin and effect on toxicity. SPIE--The International Society for Optical Engineering..