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2025

Ntshangase, Sphamandla and Khan, Shazia and Bezuidenhout, Louise and Gazárková, Taťána and Kaczynski, Jakub and Sellers, Stephanie and Rattray, Nicholas Jw and Newby, David E and Hadoke, Patrick Wf and Andrew, Ruth (2025) Spatial lipidomic profiles of atherosclerotic plaques : a mass spectrometry imaging study. Talanta, 282. 126954. ISSN 1873-3573

2024

Cunningham, Margaret R. and Rattray, Nicholas J.W. and McFadden, Yvonne and Berardi, Domenica and Daramy, Karim and Kelly, Patricia E. and Galbraith, Allison and Lochiel, Isobel and Mills, Lorraine and Scott, Yvonne and Chalmers, Susan and Lannigan, Alison and Rattray, Zahra (2024) Recounting the untold stories of breast cancer patient experiences : lessons learned from a patient-public involvement and engagement (PPIE) storytelling event. International Journal of Pharmacy Practice, 32 (6). pp. 515-523. riae052. ISSN 2042-7174

Milling, Simon and Ijaz, Umer Zeeshan and Venieri, Danae and Christidis, Georgios E. and Rattray, Nicholas J. W. and Gounaki, Iosifina and Andrusaite, Anna and Knapp, Charles W. and Jones, Alexander X. and Photos-Jones, Effie (2024) Beneficial modulation of the gut microbiome by leachates of Penicillium purpurogenum in the presence of clays : a model for the preparation and efficacy of historical Lemnian Earth. PLoS ONE, 19 (12). e0313090. ISSN 1932-6203

Al Sultan, Abdullah and Rattray, Zahra and Rattray, Nicholas J. W. (2024) Integrative analysis of toxicometabolomics and toxicoproteomics data : new molecular insights into thiazolidinedione-induced cardiotoxicity. Metabolomics, 21 (1). 1. ISSN 1573-3882

van den Driest, Lisa and Kelly, Patricia and Marshall, Alan and Johnson, Caroline H. and Lasky-Su, Jessica and Lannigan, Alison and Rattray, Zahra and Rattray, Nicholas J.W. (2024) A gap analysis of UK biobank publications reveals SNPs associated with intrinsic subtypes of breast cancer. Computational and Structural Biotechnology Journal, 23. pp. 2200-2210. ISSN 2001-0370

Jain, Abhishek and Morris, Montana T. and Berardi, Domenica and Arora, Trisha and Domingo-Almenara, Xavier and Paty, Philip B. and Rattray, Nicholas J. W. and Kerekes, Daniel and Lu, Lingeng and Khan, Sajid A. and Johnson, Caroline H. (2024) Charting the metabolic biogeography of the colorectum in cancer : challenging the right sided versus left sided classification. Molecular Cancer, 23 (1). 211. ISSN 1476-4598

Davidson, Callum G and Abdulrahman, Rand and Punnabhum, Panida and Cairns, Michael and Rattray, Nicholas J W and Capomaccio, Robin and Treacher, Kevin and Perrie, Yvonne and Rattray, Zahra (2024) The use of orthogonal analytical approaches to profile lipid nanoparticle physicochemical attributes. Nano Futures, 8 (3). 035001. ISSN 2399-1984

Daramy, Karim and Punnabhum, Panida and Hussain, Muattaz and Minelli, Caterina and Pei, Yiwen and Rattray, Nicholas J.W. and Perrie, Yvonne and Rattray, Zahra (2024) Nanoparticle isolation from biological media for protein corona analysis : the impact of incubation and recovery protocols on nanoparticle properties. Journal of Pharmaceutical Sciences, 113 (9). pp. 2826-2836. ISSN 0022-3549

Al Sultan, Abdullah and Rattray, Zahra and Rattray, Nicholas J. W. (2024) Cytotoxicity and toxicoproteomics analysis of thiazolidinedione exposure in human-derived cardiomyocytes. Journal of Applied Toxicology, 44 (8). pp. 1214-1235. ISSN 0260-437X

Al Sultan, Abdullah and Rattray, Zahra and Rattray, Nicholas J. W. (2024) Toxicometabolomics-based cardiotoxicity evaluation of Thiazolidinedione exposure in human-derived cardiomyocytes. Metabolomics, 20 (2). 24. ISSN 1573-3890

2023

Goelen, Jan and Farrell, Gillian and McGeehan, Jonathan and Titman, Christopher M. and Rattray, Nicholas J.W. and Johnson, Trevor N. and Horniblow, Richard D. and Batchelor, Hannah K. (2023) Quantification of drug metabolising enzymes and transporter proteins in the paediatric duodenum via LC-MS/MS proteomics using a QconCAT technique. European Journal of Pharmaceutics and Biopharmaceutics, 191. pp. 68-77. ISSN 0939-6411

Chen, Qingwen and Dwareka, Varun B. and Carreras-Gallo, Natàlia and Mendez, Kevin and Chen, Yulu and Begum, Sofina and Kachroo, Priyadarshini and Prince, Nicole and Went, Hannah and Mendez, Travis and Lin, Aaron and Turner, Logan and Moqri, Mahdi and Chu, Su H. and Kelly, Rachel S. and Weiss, Scott T. and Rattray, Nicholas J.W. and Gladyshev, Vadim N. and Karlson, Elizabeth and Wheelock, Craig and Mathé, Ewy A. and Dahlin, Amber and McGeachie, Michael J. and Smith, Ryan and Lasky-Su, Jessica A. (2023) OMICmAge : an integrative multi-omics approach to quantify biological age with electronic medical records. Other. bioRxiv, Cold Spring Harbor, NY.

Rosen Vollmar, Ana K. and Rattray, Nicholas J.W. and Cai, Yuping and Jain, Abhishek and Yan, Hong and Deziel, Nicole C. and Calafat, Antonia M. and Wilcox, Allen J. and Jukic, Anne Marie Z. and Johnson, Caroline H. (2023) Urinary paraben concentrations and associations with the periconceptional urinary metabolome : untargeted and targeted metabolomics analyses of participants from the early pregnancy study. Environmental Health Perspectives, 131 (9). 097006. ISSN 0091-6765

Sala, Alexandra and Cameron, James M. and Brennan, Paul M. and Crosbie, Emma J. and Curran, Tom and Gray, Ewan and Martin-Hirsch, Pierre and Palmer, David S. and Rehman, Ihtesham U. and Rattray, Nicholas J. W. and Baker, Matthew J. (2023) Global serum profiling an opportunity for earlier cancer detection. Journal of Experimental & Clinical Cancer Research, 42 (1). 207. ISSN 1756-9966

Ng, Hwei Jene and Quasim, Tara and Rattray, Nicholas J. W. and Moug, Susan (2023) Investigation of frailty markers including a novel biomarker panel in emergency laparotomy : protocol of a prospective cohort study. BMC Surgery, 23 (1). 190. ISSN 1471-2482

Felton, T. W. and Ahmed, W. and White, I. R. and van Oort, P. and Rattray, N. J. W. and Docherty, C. and Bannard‐Smith, J. and Morton, B. and Welters, I. and McMullan, R. and Roberts, S. A. and Goodacre, R. and Dark, P. M. and Fowler, S. J. (2023) Analysis of exhaled breath to identify critically ill patients with ventilator‐associated pneumonia. Anaesthesia, 78 (6). pp. 712-721. ISSN 0003-2409

Cunningham, Margaret R and Rattray, Nicholas JW and McFadden, Yvonne and Berardi, Domenica and Kelly, Patricia E and Daramy, Karim and Galbraith, Allison and Lochiel, Isobel and Mills, Lorraine and Scott, Yvonne and Chalmers, Susan and Lannigan, Alison and Rattray, Zahra (2023) A roadmap for patient-public involvement and engagement (PPIE) : recounting the untold stories of breast cancer patient experiences. Other. medRxiv, Ithaca, New York.

O’Boyle, Nicky and Douce, Gillian R. and Farrell, Gillian and Rattray, Nicholas J. W. and Schembri, Mark A. and Roe, Andrew J. and Connolly, James P. R. (2023) Distinct ecological fitness factors coordinated by a conserved Escherichia coli regulator during systemic bloodstream infection. Proceedings of the National Academy of Sciences, 120 (1). e2212175120. ISSN 0027-8424

2022

Kelly, Patricia E. and Jene Ng, H and Farrell, Gillian and McKirdy, Shona and Russell, Richard K. and Hansen, Richard and Rattray, Zahra and Gerasimidis, Konstantinos and Rattray, Nicholas J. W. (2022) An optimised monophasic faecal extraction method for LC-MS analysis and its application in gastrointestinal disease. Metabolites, 12 (11). 1110. ISSN 2218-1989

Cai, Yuping and Shen, Xinyi and Lu, Lingeng and Yan, Hong and Huang, Huang and Gaule, Patricia and Muca, Engjel and Theriot, Casey M. and Rattray, Zahra and Rattray, Nicholas J. W. and Lu, Jun and Ahuja, Nita and Zhang, Yawei and Paty, Philip B. and Khan, Sajid A. and Johnson, Caroline H. (2022) Bile acid distributions, sex-specificity, and prognosis in colorectal cancer. Biology of Sex Differences, 13 (1). 61. ISSN 2042-6410

Abdullah, Mahmud O. and Zeng, Run X. and Margerum, Chelsea L. and Papadopoli, David and Monnin, Cian and Punter, Kaylee B. and Chu, Charles and Al-Rofaidi, Mohammad and Al-Tannak, Naser F. and Berardi, Domenica and Rattray, Zahra and Rattray, Nicholas J.W. and Abraham, Sheela A. and Eskelinen, Eeva-Liisa and Watson, David G. and Avizonis, Daina and Topisirovic, Ivan and Chan, Edmond Y.W. (2022) Mitochondrial hyperfusion via metabolic sensing of regulatory amino acids. Cell Reports, 40 (7). p. 111198. 111198. ISSN 2211-1247

Alnoumas, Layla and Van Den Driest, Lisa and Apczynski, Zoe and Lannigan, Alison and Johnson, Caroline H. and Rattray, Nicholas J. W. and Rattray, Zahra (2022) Evaluation of the role of KPNA2 mutations in breast cancer prognosis using bioinformatics datasets. BMC Cancer, 22 (1). p. 874. 874. ISSN 1471-2407

Berardi, Domenica and Hunter, Yasmin and Van Den Driest, Lisa and Farrell, Gillian and Rattray, Nicholas J. W. and Rattray, Zahra (2022) The differential metabolic signature of breast cancer cellular response to olaparib treatment. Cancers, 14 (15). 3661. ISSN 2072-6694

Van Den Driest, Lisa and Johnson, Caroline H. and Rattray, Nicholas J. W. and Rattray, Zahra (2022) Development of an accessible gene expression bioinformatics pipeline to identify driver mutations of colorectal cancer. Alternatives to Laboratory Animals, 50 (4). pp. 282-292. ISSN 2632-3559

Berardi, Domenica and Hunter, Yasmin and Van Den Driest, Lisa and Rattray, Nicholas and Rattray, Zahra and Farrell, Gillian (2022) The differential metabolic signature of breast cancer cellular response to olaparib treatment. Other. bioRxiv, Cold Spring Harbor.

2021

van den Driest, Lisa and Johnson, Caroline H and Rattray, Nicholas JW and Rattray, Zahra (2021) Development of an accessible gene expression bioinformatics pipeline to study driver mutations of colorectal cancer. Other. medRxiv, Cold Spring Harbor.

Alnoumas, Layla and Van Den Driest, Lisa and Lannigan, Alison and Johnson, Caroline H and Rattray, Nicholas JW and Rattray, Zahra (2021) The role of KPNA2 mutations in breast cancer prognosis : a survey of publicly available databases. Other. medRxiv, New York.

Ahmed, Waqar and White, Iain R. and Wilkinson, Maxim and Johnson, Craig F. and Rattray, Nicholas and Kishore, Amit K. and Goodacre, Royston and Smith, Craig J. and Fowler, Stephen J. (2021) Breath and plasma metabolomics to assess inflammation in acute stroke. Scientific Reports, 11 (1). 21949. ISSN 2045-2322

Charkoftaki, Georgia and Golla, Jaya Prakash and Santos-Neto, Alvaro and Orlicky, David and Garcia-Milian, Rolando and Chen, Ying and Rattray, Nicholas and Cai, Yuping and Wang, Yewei and Shern, Colin and Mironova, Varvara and Wang, Yensheng and Johnson, Caroline H. and Thompson, David and Vasilou, Vasilis (2021) Identification of dose-dependent DNA damage and repair responses from subchronic exposure to 1,4-dioxane in mice using a systems analysis approach. Toxicological Sciences, 183 (2). pp. 338-351. ISSN 1096-6080

Rattray, Zahra and Deng, Gang and Zhang, Shenqi and Shirali, Anupama and May, Christopher K. and Chen, Xiaoyong and Cuffari, Benedette J. and Liu, Jun and Zou, Pan and Rattray, Nicholas J.W. and Johnson, Caroline H. and Dubljevic, Valentina and Campbell, James A. and Huttner, Anita and Baehring, Joachim M. and Zhou, Jiangbing and Hansen, James E. (2021) ENT2 facilitates brain endothelial cell penetration and blood-brain barrier transport by a tumor-targeting anti-DNA autoantibody. JCI Insight, 6 (14). e145875. ISSN 2379-3708

Cai, Yuping and Kim, Daniel J. and Takahashi, Takehiro and Broadhurst, David I. and Yan, Hong and Ma, Shuanagge and Rattray, Nicholas J. W. and Casanovas-Massana, Arnau and Israelow, Benjamin and Klein, Jon and Lucas, Carolina and Mao, Tianyang and Moore, Adam J. and Muenker, M. Catherine and Oh, Ji Eun and Silva, Julio and Wong, Patrick and Ko, Albert I. and Khan, Sajid A. and Iwasaki, Akiko and Johnson, Caroline H. (2021) Kynurenic acid may underlie sex-specific immune responses to COVID-19. Science Signaling, 14 (690). eabf8483. ISSN 1945-0877

Yang, Xiaochen and Lam, Wing and Jiang, Zaoli and Guan, Fulan and Han, Xue and Hu, Rong and Cai, Wei and Cheng, William and Liu, Shwu-Huey and Cheng, Peikwen and Cai, Yuping and Rattray, Nicholas and Johnson, Caroline and Chen, Lieping and Cheng, Yung-Chi (2021) YIV‑906 potentiated anti‑PD1action against hepatocellular carcinoma by enhancing adaptive and innate immunity in the tumor microenvironment. Scientific Reports, 11 (1). 13482. ISSN 2045-2322

van Oort, Pouline MP and Nijsen, Tamara M and White, Iain R and Knobel, Hugo H and Felton, Timothy and Rattray, Nicholas and Lawal, Oluwasola and Bulut, Mustaza and Ahmed, Waqar and Artigas, Antonio and Povoa, Pedro R and Martin-Loeches, Ignacio and Weda, Hans and Goodacre, Royston and Schultz, Marcus J and Dark, Paul M and Fowler, Stephen J and Bos, Lieuwe D (2021) Untargeted molecular analysis of exhaled breath as a diagnostic test for ventilator-associated lower respiratory tract infections (BreathDx). Thorax. 217362. ISSN 0040-6376

2020

Cai, Yuping and Rattray, Nicholas J. W. and Zhang, Qian and Mironova, Varvara and Santos-Neto, Alvaro and Hsu, Kuo Shun and Muca, Engjel and Rosen Vollmar, Ana K. and Hsu, Kuo-Shun and Rattray, Zahra and Cross, Justin R. and Zhang, Yawei and Batty, Philip B. and Khan, Sajid A. and Johnson, Caroline H. (2020) Tumor tissue-specific biomarkers of colorectal cancer by anatomic location and stage. Metabolites, 10 (6). 257. ISSN 2218-1989

Cai, Yuping and Rattray, Nicholas J. W. and Zhang, Qian and Mironova, Varvara and Santos-Neto, Alvaro and Hsu, Kuo-Shun and Rattray, Zahra and Cross, Justin R. and Zhang, Yawei and Paty, Philip B. and Khan, Sajid A. and Johnson, Caroline H. (2020) Sex differences in colon cancer metabolism reveal a novel subphenotype. Scientific Reports, 10. 4905. ISSN 2045-2322

2019

Rattray, Nicholas J.W. and Trivedi, Drupad K. and Xu, Yun and Chandola, Tarani and Johnson, Caroline H. and Marshall, Alan D. and Mekli, Krisztina and Rattray, Zahra and Tampubolon, Gindo and Vanhoutte, Bram and White, Iain R. and Wu, Frederick C.W. and Pendleton, Neil and Nazroo, James and Goodacre, Royston (2019) Metabolic dysregulation in vitamin E and carnitine shuttle energy mechanisms associate with human frailty. Nature Communications, 10 (1). 5027. ISSN 2041-1723

Rosen Vollmar, Ana K. and Rattray, Nicholas J. W. and Cai, Yuping and Santos-Neto, Álvaro J. and Deziel, Nicole C. and Jukic, Anne Marie Z. and Johnson, Caroline H. (2019) Normalizing untargeted periconceptional urinary metabolomics data : a comparison of approaches. Metabolites, 9 (10). 198. ISSN 2218-1989

Brinkman, Paul and Wagener, Ariane H. and Hekking, Pieter-Paul and Bansal, Aruna T. and Maitland-van der Zee, Anke-Hilse and Wang, Yuanyue and Weda, Hans and Knobel, Hugo H. and Vink, Teunis J. and Rattray, Nicholas J. and D'Amico, Arnaldo and Pennazza, Giorgio and Santonico, Marco and Lefaudeux, Diane and De Meulder, Bertrand and Auffray, Charles and Bakke, Per S. and Caruso, Massimo and Chanez, Pascal and Chung, Kian F. and Corfield, Julie and Dahlén, Sven-Erik and Djukanovic, Ratko and Geiser, Thomas and Horvath, Ildiko and Krug, Nobert and Musial, Jacek and Sun, Kai and Riley, John H. and Shaw, Dominic E. and Sandström, Thomas and Sousa, Ana R. and Montuschi, Paolo and Fowler, Stephen J. and Sterk, Peter J. (2019) Identification and prospective stability of electronic nose (eNose)–derived inflammatory phenotypes in patients with severe asthma. Journal of Allergy and Clinical Immunology, 143 (5). 1811-1820.e7. ISSN 1097-6825

Jervis, Adrian J. and Carbonell, Pablo and Vinaixa, Maria and Dunstan, Mark S. and Hollywood, Katherine A. and Robinson, Christopher J. and Rattray, Nicholas J.W. and Yan, Cunyu and Swainston, Neil and Currin, Andrew and Sung, Rehana and Toogood, Helen and Taylor, Sandra and Faulon, Jean Loup and Breitling, Rainer and Takano, Eriko and Scrutton, Nigel S. (2019) Machine learning of designed translational control allows predictive pathway optimization in Escherichia coli. ACS Synthetic Biology, 8 (1). pp. 127-136.

Warth, Benedikt and Palermo, Amelia and Rattray, Nicholas J.W. and Lee, Nathan V. and Zhu, Zhou and Hoang, Linh T. and Cai, Yuping and Mazurek, Anthony and Dann, Stephen and VanArsdale, Todd and Fantin, Valeria R. and Shields, David and Siuzdak, Gary and Johnson, Caroline H. (2019) Palbociclib and fulvestrant act in synergy to modulate central carbon metabolism in breast cancer cells. Metabolites, 9 (1). 7. ISSN 2218-1989

2018

Ahmed, Waqar M and Brinkman, Paul and Weda, Hans and Knobel, Hugo H and Xu, Yun and Nijsen, Tamara M and Goodacre, Roy and Rattray, Nicholas and Vink, Teunis J and Santonico, Marco and Pennazza, Giorgio and Montuschi, Paulo and Sterk, Peter J and Fowler, Stephen J (2018) Methodological considerations for large-scale breath analysis studies : lessons from the U-BIOPRED severe asthma project. Journal of Breath Research, 13 (1). ISSN 1752-7163

Carbonell, Pablo and Jervis, Adrian J. and Robinson, Christopher J. and Yan, Cunyu and Dunstan, Mark and Swainston, Neil and Vinaxia, Maria and Hollywood, Katherine A. and Currin, Andrew and Rattray, Nicholas J.W. and Taylor, Sandra and Speiss, Reynard and Sung, Rehana and Williams, Alan R. and Fellows, Donal and Stanford, Natalie J. and Mulherin, Paul and Le Feuvre, Rosalind and Barran, Perdita and Goodacre, Royston and Turner, Nicholas J. and Goble, Carole and Chen, George Guoqiang and Kell, Douglas B. and Mickelfield, Jason and Breitling, Reiner and Takano, Eriko and Faulon, Jean-Loup and Scrutton, Nigel S. (2018) An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals. Communications Biology, 1. 66. ISSN 2399-3642

Charkoftaki, Georgia and Rattray, Nicholas J. W. and Andrén, Per E. and Caprioli, Richard M. and Castellino, Steven and Duncan, Mark W. and Goodwin, Richard J. A. and Schey, Kevin L. and Shahidi-Latham, Sheerin K. and Veselkov, Kirill A. and Johnson, Caroline H. and Vasiliou, Vasilis (2018) Yale School of Public Health Symposium on tissue imaging mass spectrometry : illuminating phenotypic heterogeneity and drug disposition at the molecular level. Human Genomics, 12 (10). ISSN 1479-7364

Rattray, Zahra and Dubljevic, Valentina and Rattray, Nicholas and Greenwood, Deanne L. and Johnson, Caroline H. and Campbell, James A. and Hansen, James E. (2018) Re-engineering and evaluation of anti-DNA autoantibody 3E10 for therapeutic applications. Biochemical and Biophysical Research Communications, 496 (3). pp. 858-864. ISSN 1090-2104

Rattray, Nicholas J. W. and Deziel, Nicole C. and Wallach, Joshua D. and Khan, Sajid A. and Vasiliou, Vasilis and Ioannidis, John P. A. and Johnson, Caroline H. (2018) Beyond genomics : understanding exposotypes through metabolomics. Human Genomics, 12 (4). ISSN 1479-7364

Currin, Andrew and Dunstan, Mark S. and Johannissen, Linus O. and Hollywood, Katherine A. and Vinaxia, Maria and Jervis, Adrian J. and Swainston, Neil and Rattray, Nicholas J. W. and Gardiner, John M. and Kell, Douglas B. and Takano, Eriko and Toogood, Helen S. and Scrutton, Nigel S. (2018) Engineering the “missing link” in biosynthetic (−)-menthol production : bacterial isopulegone isomerase. ACS Catalysis, 8 (3). 2012–2020. ISSN 2155-5435

2017

Johnson, Caroline H. and Santidrian, Antonio F. and LeBoeuf, Sarah E. and Kurzy, Michael E. and Rattray, Nicholas and Rattray, Zahra and Warth, Benedikt and Ritland, Melissa and Hoang, Linh T. and Loriot, Celine and Higa, Jason and Hansen, James E. and Felding, Brunhilde H. and Siuzdak, Gary (2017) Metabolomics guided pathway analysis reveals link between cancer metastasis, cholesterol sulfate, and phospholipids. Cancer and Metabolism, 5 (1). ISSN 2049-3002

Waller, J. and Toogood, H. S. and Karuppiah, V. and Rattray, N. J. W. and Mansell, D. J. and Leys, D. and Gardiner, J. M. and Fryszkowska, A. and Ahmed, S. T. and Bandichhor, R. and Reddy, G. P. and Scrutton, N. S. (2017) Structural insights into the ene-reductase synthesis of profens. Organic and Biomolecular Chemistry, 15 (20). pp. 4440-4448. ISSN 1477-0520

Huan, Tao and Forsberg, Erica M and Rinehart, Duane and Johnson, Caroline H and Ivanisevic, Julijana and Benton, H Paul and Fang, Mingliang and Aisporna, Aries and Hilmers, Brian and Poole, Farris L and Thorgersen, Michael P and Adams, Michael W W and Krantz, Gregory and Fields, Matthew W and Robbins, Paul D and Neidernhofer, Laura J and Ideker, Trey and Majumder, Erica L and Wall, Judy D and Rattray, Nicholas J W and Goodacre, Roy and Lairson, Luke L and Siuzdak, Gary (2017) Systems biology guided by XCMS Online metabolomics. Nature Methods, 14 (5). pp. 461-462. ISSN 1548-7105

Matthews, Sarah and Tee, Kang Lan and Rattray, Nicholas J. and McLean, Kirsty J. and Leys, David and Parker, David A. and Blankley, Richard T. and Munro, Andrew W. (2017) Production of alkenes and novel secondary products by P450 OleTJE using novel H2O2-generating fusion protein systems. FEBS Letters, 591 (5). pp. 737-750. ISSN 0014-5793

van Oort, Pouline M. P. and Nijsen, Tamara and Weda, Hans and Knobel, Hugo and Dark, Paul and Felton, Timothy and Rattray, Nicholas J. W. and Lawal, Oluwasola and Ahmed, Waqar and Portsmouth, Craig and Sterk, Peter J. and Schultz, Marcus J. and Zakharkina, Tetyana and Artigas, Antonio and Povoa, Pedro and Martin-Loeches, Ignacio and Fowler, Stephen J. and Bos, Lieuwe D. J. (2017) BreathDx - molecular analysis of exhaled breath as a diagnostic test for ventilator-associated pneumonia : protocol for a European multicentre observational study. BMC Pulmonary Medicine, 17. 1. ISSN 1471-2466

2016

AlMasoud, Najla and Xu, Yun and Trivedi, Drupad K. and Salivo, Simona and Abban, Tom and Rattray, Nicholas J. W. and Szula, Ewa and AlRabiah, Haitham and Sayqal, Ali and Goodacre, Royston (2016) Classification of Bacillus and Brevibacillus species using rapid analysis of lipids by mass spectrometry. Analytical and Bioanalytical Chemistry, 408 (27). pp. 7865-7878. ISSN 1618-2642

Dyson, Beth C. and Miller, Matthew A.E. and Feil, Regina and Rattray, Nicholas and Bowsher, Caroline G. and Goodacre, Royston and Lunn, John E. and Johnson, Giles N. (2016) FUM2, a cytosolic fumarase, is essential for acclimation to low temperature in Arabidopsis thaliana. Plant Physiology, 172 (1). pp. 118-127. ISSN 1532-2548

Carbonell, Pablo and Currin, Andrew and Jervis, Adrian J. and Rattray, Nicholas J. W. and Swainston, Neil and Yan, Cunyu and Takano, Eriko and Breitling, Rainer (2016) Bioinformatics for the synthetic biology of natural products : integrating across the Design-Build-Test cycle. Natural product reports, 33 (8). pp. 925-932. ISSN 1460-4752

Sayqal, Ali and Xu, Yun and Trivedi, Drupad K. and Almasoud, Najla and Ellis, David I. and Rattray, Nicholas J.W. and Goodacre, Royston (2016) Metabolomics analysis reveals the participation of efflux pumps and ornithine in the response of pseudomonas putida DOT-T1E cells to challenge with propranolol. PLoS ONE, 11 (6). e0156509. ISSN 1932-6203

Sayqal, Ali and Xu, Yun and Trivedi, Drupad K. and AlMasoud, Najla and Ellis, David I. and Muhamadali, Howbeer and Rattray, Nicholas J. W. and Webb, Carole and Goodacre, Royston (2016) Metabolic analysis of the response of Pseudomonas putida DOT-T1E strains to toluene using Fourier transform infrared spectroscopy and gas chromatography mass spectrometry. Metabolomics, 12 (7). 112. ISSN 1573-3882

Carbonell, Pablo and Currin, Andrew and Dunstan, Mark and Fellows, Donal and Jervis, Adrian and Rattray, Nicholas J. W. and Robinson, Christopher J. and Swainston, Neil and Vinaixa, Maria and Williams, Alan and Yan, Cunyu and Barran, Perdita and Breitling, Rainer and Chen, George Guo-Qiang and Faulon, Jean Loup and Goble, Carole and Goodacre, Royston and Kell, Douglas B. and Feuvre, Rosalind Le and Micklefield, Jason and Scrutton, Nigel S. and Shapira, Philip and Takano, Eriko and Turner, Nicholas J. (2016) SYNBIOCHEM - A SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals. Biochemical Society Transactions, 44 (3). pp. 675-677. ISSN 0300-5127

Harvie, Michelle N. and Sims, Andrew H. and Pegington, Mary and Spence, Katherine and Mitchell, Adam and Vaughan, Andrew A. and Allwood, J. William and Xu, Yun and Rattray, Nicolas J. W. and Goodacre, Royston and Evans, D. Gareth R. and Mitchell, Ellen and McMullen, Debbie and Clarke, Robert B. and Howell, Anthony (2016) Intermittent energy restriction induces changes in breast gene expression and systemic metabolism. Breast Cancer Research, 18. 57. ISSN 1465-5411

Higham, Andrew and Rattray, Nicholas J. W. and Dewhurst, Jennfier A. and Trivedi, Drupad K. and Fowler, Stephen J. and Goodacre, Royston and Singh, Dave (2016) Electronic cigarette exposure triggers neutrophil inflammatory responses. Respiratory Research, 17. 56. ISSN 1465-9921

Ogbaga, Chukwuma C. and Stepien, Piotr and Dyson, Beth C. and Rattray, Nicholas J. W. and Ellis, David I. and Goodacre, Royston and Johnson, Giles N. (2016) Biochemical analyses of sorghum varieties reveal differential responses to drought. PLoS ONE, 11 (5). e0154423. ISSN 1932-6203

Trivedi, Drupad K. and Hollywood, Katherine A. and Rattray, Nicholas J. W. and Ward, Holli and Trivedi, Dakshat K. and Greenwood, Joseph and Ellis, David I. and Goodacre, Royston (2016) Meat, the metabolites : an integrated metabolite profiling and lipidomics approach for the detection of the adulteration of beef with pork. Analyst, 141 (7). pp. 2155-2164. ISSN 0003-2654

Decuypere, Saskia and Maltha, Jessica and Deborggraeve, Stijn and Rattray, Nicholas J. W. and Issa, Guiraud and Bérenger, Kaboré and Lompo, Palpouguini and Tahita, Marc C. and Ruspasinghe, Thusitha and McConville, Malcolm and Goodacre, Royston and Tinto, Halidou and Jacobs, Jan and Carapetis, Jonathan R. (2016) Towards improving point-of-care diagnosis of non-malaria febrile illness : a metabolomics approach. PLOS Neglected Tropical Diseases, 10 (3). e0004480. ISSN 1935-2727

Muhamadali, Howbeer and Xu, Yun and Morra, Rosa and Trivedi, Drupad K. and Rattray, Nicholas J. W. and Dixon, Neil and Goodacre, Royston (2016) Metabolomic analysis of riboswitch containing E. coli recombinant expression system. Molecular BioSystems, 12 (2). pp. 350-361. ISSN 1742-206X

2015

Bajhaiya, Amit K. and Dean, Andrew P. and Driver, Thomas and Trivedi, Drupad K. and Rattray, Nicholas J.W. and Allwood, J. William and Goodacre, Royston and Pittman, Jon K. (2015) High-throughput metabolic screening of microalgae genetic variation in response to nutrient limitation. Metabolomics, 12 (1). 9. ISSN 1573-3882

Muhamadali, Howbeer and Xu, Yun and Ellis, David I. and Trivedi, Drupad K. and Rattray, Nicholas J. W. and Bernaerts, Kristel and Goodacre, Royston (2015) Metabolomics investigation of recombinant mTNFaα production in Streptomyces lividans. Microbial Cell Factories, 14. 157. ISSN 1475-2859