Browse by Author or creator

Article

Parra, Jonathan and Jarmusch, Scott A. and Duncan, Katherine R. (2024) Multi-omics analysis of antagonistic interactions among free-living Pseudonocardia from diverse ecosystems. Environmental Microbiology, 26 (6). e16635. ISSN 1462-2920

Hughes, Alison H. and Duncan, Katherine R. (2024) Eliciting specialized metabolites from marine microalgae using abiotic stress. Applied Phycology, 5 (1). pp. 1-11. ISSN 2638-8081

Parra, Jonathan and Beaton, Ainsley and Seipke, Ryan F and Wilkinson, Barrie and Hutchings, Matthew I and Duncan, Katherine R (2023) Antibiotics from rare actinomycetes, beyond the genus Streptomyces. Current Opinion in Microbiology, 76. 102385. ISSN 1369-5274

Mullowney, Michael W. and Duncan, Katherine R. and Elsayed, Somayah S. and Garg, Neha and van der Hooft, Justin J. J. and Martin, Nathaniel I. and Meijer, David and Terlouw, Barbara R. and Biermann, Friederike and Blin, Kai and Durairaj, Janani and Gorostiola González, Marina and Helfrich, Eric J. N. and Huber, Florian and Leopold-Messer, Stefan and Rajan, Kohulan and de Rond, Tristan and van Santen, Jeffrey A. and Sorokina, Maria and Balunas, Marcy J. and Beniddir, Mehdi A. and van Bergeijk, Doris A. and Carroll, Laura M. and Clark, Chase M. and Clevert, Djork-Arné and Dejong, Chris A. and Du, Chao and Ferrinho, Scarlet and Grisoni, Francesca and Hofstetter, Albert and Jespers, Willem and Kalinina, Olga V. and Kautsar, Satria A. and Kim, Hyunwoo and Leao, Tiago F. and Masschelein, Joleen and Rees, Evan R. and Reher, Raphael and Reker, Daniel and Schwaller, Philippe and Segler, Marwin and Skinnider, Michael A. and Walker, Allison S. and Willighagen, Egon L. and Zdrazil, Barbara and Ziemert, Nadine and Goss, Rebecca J. M. and Guyomard, Pierre and Volkamer, Andrea and Gerwick, William H. and Kim, Hyun Uk and Müller, Rolf and van Wezel, Gilles P. and van Westen, Gerard J. P. and Hirsch, Anna K. H. and Linington, Roger G. and Robinson, Serina L. and Medema, Marnix H. (2023) Artificial intelligence for natural product drug discovery. Nature Reviews Drug Discovery, 22 (11). pp. 895-916. ISSN 1474-1784

Domingo-Roca, R. and Lasserre, P. and Riordan, L. and Macdonald, A.R. and Dobrea, A. and Duncan, K.R. and Hannah, S. and Murphy, M. and Hoskisson, P.A. and Corrigan, D.K. (2023) Rapid assessment of antibiotic susceptibility using a fully 3D-printed impedance- based biosensor. Biosensors and Bioelectronics X, 13. 100308. ISSN 2590-1370

Terlouw, Barbara R. and Blin, Kai and Navarro-Muñoz, Jorge C. and Avalon, Nicole E. and Chevrette, Marc G. and Egbert, Susan and Lee, Sanghoon and Meijer, David and Recchia, Michael J.J. and Reitz, Zachary L. and van Santen, Jeffrey A. and Selem-Mojica, Nelly and Tørring, Thomas and Zaroubi, Liana and Alanjary, Mohammad and Aleti, Gajender and Aguilar, César and Al-Salihi, Suhad A.A. and Augustijn, Hannah E. and Avelar-Rivas, J. Abraham and Avitia-Domínguez, Luis A. and Barona-Gómez, Francisco and Bernaldo-Agüero, Jordan and Bielinski, Vincent A. and Biermann, Friederike and Booth, Thomas J. and Carrion Bravo, Victor J. and Castelo-Branco, Raquel and Chagas, Fernanda O. and Cruz-Morales, Pablo and Du, Chao and Duncan, Katherine R. and Gavriilidou, Athina and Gayrard, Damien and Gutiérrez-García, Karina and Haslinger, Kristina and Helfrich, Eric J.N. and van der Hooft, Justin J.J. and Jati, Afif P. and Kalkreuter, Edward and Kalyvas, Nikolaos and Kang, Kyo B. and Kautsar, Satria and Kim, Wonyong and Kunjapur, Aditya M. and Li, Yong-Xin and Lin, Geng-Min and Loureiro, Catarina and Louwen, Joris J.R. and Louwen, Nico L.L. and Lund, George and Parra, Jonathan and Philmus, Benjamin and Pourmohsenin, Bita and Pronk, Lotte J.U. and Rego, Adriana and Balaya Rex, Devasahayam Arokia and Robinson, Serina and Rosas-Becerra, L. Rodrigo and Roxborough, Eve T. and Schorn, Michelle A. and Scobie, Darren J. and Singh, Kumar Saurabh and Sokolova, Nika and Tang, Xiaoyu and Udwary, Daniel and Vigneshwari, Aruna and Vind, Kristiina and Vromans, Sophie P.J.M. and Waschulin, Valentin and Williams, Sam E. and Winter, Jaclyn M. and Witte, Thomas E. and Xie, Huali and Yang, Dong and Yu, Jingwei and Zdouc, Mitja and Zhong, Zheng and Collemare, Jérôme and Linington, Roger G. and Weber, Tilmann and Medema, Marnix H. (2023) MIBiG 3.0 : a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research, 51 (D1). D603-D610. gkac1049. ISSN 1362-4962

Feeney, Morgan Anne and Newitt, Jake Terry and Addington, Emily and Algora-Gallardo, Lis and Allan, Craig and Balis, Lucas and Birke, Anna S. and Castaño-Espriu, Laia and Charkoudian, Louise K. and Devine, Rebecca and Gayrard, Damien and Hamilton, Jacob and Hennrich, Oliver and Hoskisson, Paul A. and Keith-Baker, Molly and Klein, Joshua G. and Kruasuwan, Worarat and Mark, David R. and Mast, Yvonne and McHugh, Rebecca E. and McLean, Thomas C. and Mohit, Elmira and Munnoch, John T. and Murray, Jordan and Noble, Katie and Otani, Hiroshi and Parra, Jonathan and Pereira, Camila F. and Perry, Louisa and Pintor-Escobar, Linamaria and Pritchard, Leighton and Prudence, Samuel M. M. and Russell, Alicia H. and Schniete, Jana K. and Seipke, Ryan F. and Sélem-Mojica, Nelly and Undabarrena, Agustina and Vind, Kristiina and van Wezel, Gilles P. and Wilkinson, Barrie and Worsley, Sarah F. and Duncan, Katherine R. and Fernández-Martínez, Lorena T. and Hutchings, Matthew I. (2022) ActinoBase : tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria. Microbial Genomics, 8 (7). 000824. ISSN 2057-5858

Dunphy, R. David and Lasserre, Perrine and Riordan, Lily and Duncan, Katherine R. R and McCormick, Christopher and Murray, Paul and Corrigan, Damion K. (2022) Combining hyperspectral imaging and electrochemical sensing for detection of Pseudomonas aeruginosa through pyocyanin production. Sensors and Diagnostics, 1 (4). pp. 841-850. ISSN 2635-0998

Hutchings, Matthew I. and Duncan, Katherine R. (2022) Overcoming drug resistance, the natural way. Cell Host & Microbe, 30 (3). pp. 273-274. ISSN 1931-3128

van Santen, Jeffrey A. and Poynton, Ella F. and Iskakova, Dasha and McMann, Emily and Alsup, Tyler A. and Clark, Trevor N. and Fergusson, Claire H and Fewer, David P and Hughes, Alison H. and McCadden, Caitlin A. and Parra, Jonathan and Soldatou, Sylvia and Rudolf, Jeffrey D and Janssen, Elisabeth M.-L. and Duncan, Katherine R. and Linington, Roger G. (2022) The Natural Products Atlas 2.0 : a database of microbially-derived natural products. Nucleic Acids Research, 50 (D1). D1317-D1323. ISSN 1362-4962

Parra, Jonathan and Soldatou, Sylvia and Rooney, Liam M. and Duncan, Katherine R. (2021) Pseudonocardia abyssalis sp. nov. and Pseudonocardia oceani sp. nov., two novel actinomycetes isolated from the deep Southern Ocean. International Journal of Systematic and Evolutionary Microbiology, 71 (9). 005032. ISSN 1466-5026

Eldjárn, Grímur Hjörleifsson and Ramsay, Andrew and van der Hooft, Justin J. J. and Duncan, Katherine R. and Soldatou, Sylvia and Rousu, Juho and Daly, Rónán and Wandy, Joe and Rogers, Simon (2021) Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions. PLoS Computational Biology, 17 (5). e1008920. ISSN 1553-734X

Schorn, Michelle A. and Verhoeven, Stefan and Ridder, Lars and Huber, Florian and Acharya, Deepa D. and Aksenov, Alexander A. and Aleti, Gajender and Moghaddam, Jamshid Amiri and Aron, Allegra T. and Aziz, Saefuddin and Bauermeister, Anelize and Bauman, Katherine D. and Baunach, Martin and Beemelmanns, Christine and Beman, J. Michael and Berlanga-Clavero, María Victoria and Blacutt, Alex A. and Bode, Helge B. and Boullie, Anne and Brejnrod, Asker and Bugni, Tim S. and Calteau, Alexandra and Cao, Liu and Carrión, Víctor J. and Castelo-Branco, Raquel and Chanana, Shaurya and Chase, Alexander B. and Chevrette, Marc G. and Costa-Lotufo, Leticia V. and Crawford, Jason M. and Currie, Cameron R. and Cuypers, Bart and Dang, Tam and de Rond, Tristan and Demko, Alyssa M. and Dittmann, Elke and Du, Chao and Drozd, Christopher and Dujardin, Jean-Claude and Dutton, Rachel J. and Edlund, Anna and Fewer, David P. and Garg, Neha and Gauglitz, Julia M. and Gentry, Emily C. and Gerwick, Lena and Glukhov, Evgenia and Gross, Harald and Gugger, Muriel and Guillén Matus, Dulce G. and Helfrich, Eric J. N. and Hempel, Benjamin-Florian and Hur, Jae-Seoun and Iorio, Marianna and Jensen, Paul R. and Kang, Kyo Bin and Kaysser, Leonard and Kelleher, Neil L. and Kim, Chung Sub and Kim, Ki Hyun and Koester, Irina and König, Gabriele M. and Leao, Tiago and Lee, Seoung Rak and Lee, Yi-Yuan and Li, Xuanji and Little, Jessica C. and Maloney, Katherine N. and Männle, Daniel and Martin H., Christian and McAvoy, Andrew C. and Metcalf, Willam W. and Mohimani, Hosein and Molina-Santiago, Carlos and Moore, Bradley S. and Mullowney, Michael W. and Muskat, Mitchell and Nothias, Louis-Félix and O'Neill, Ellis C. and Parkinson, Elizabeth I. and Petras, Daniel and Piel, Jörn and Pierce, Emily C. and Pires, Karine and Reher, Raphael and Romero, Diego and Roper, M. Caroline and Rust, Michael and Saad, Hamada and Saenz, Carmen and Sanchez, Laura M. and Sørensen, Søren Johannes and Sosio, Margherita and Süssmuth, Roderich D. and Sweeney, Douglas and Tahlan, Kapil and Thomson, Regan J. and Tobias, Nicholas J. and Trindade-Silva, Amaro E. and van Wezel, Gilles P. and Wang, Mingxun and Weldon, Kelly C. and Zhang, Fan and Ziemert, Nadine and Duncan, Katherine R. and Crüsemann, Max and Rogers, Simon and Dorrestein, Pieter C. and Medema, Marnix H. and van der Hooft, Justin J. J. (2021) A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology, 17 (4). pp. 363-368. ISSN 1552-4450

Soldatou, Sylvia and Eldjárn, Grímur Hjörleifsson and Ramsey, Andrew and van der Hooft, Justin J. J. and Hughes, Alison H. and Rogers, Simon and Duncan, Katherine R. (2021) Comparative metabologenomics analysis of polar actinomycetes. Marine Drugs, 19 (2). 103. ISSN 1660-3397

Hughes, Alison H. and Magot, Florent and Tawfike, Ahmed F. and Rad-Menéndez, Cecilia and Thomas, Naomi and Young, Louise C. and Stucchi, Laura and Carettoni, Daniele and Stanley, Michele S. and Edrada-Ebel, RuAngelie and Duncan, Katherine R. (2021) Exploring the chemical space of macro- and micro-algae using comparative metabolomics. Microorganisms, 9 (2). 311. ISSN 2076-2607

van der Hooft, Justin J. J. and Mohimani, Hosein and Bauermeister, Anelize and Dorrestein, Pieter C and Duncan, Katherine R. and Medema, Marnix H. (2020) Linking genomics and metabolomics to chart specialized metabolic diversity. Chemical Society Reviews, 49 (11). pp. 3297-3314. ISSN 0306-0012

Sebak, Mohamed and Saafan, Amal E and AbdelGhani, Sameh and Bakeer, Walid and El-Gendy, Ahmed O. and Castaño Espriu, Laia and Duncan, Katherine and Edrada-Ebel, RuAngelie (2019) Bioassay- and metabolomics-guided screening of bioactive soil actinomycetes from the ancient city of Ihnasia, Egypt. PLOS One, 14 (12). e0226959. ISSN 1932-6203

van Santen, Jeffrey A. and Jacob, Grégoire and Singh, Amrit Leen and Aniebok, Victor and Balunas, Marcy J. and Bunsko, Derek and Carnevale Neto, Fausto and Castanño-Espriu, Laia and Chang, Chen and Clark, Trevor N. and Cleary Little, Jessica L. and Delgadillo, David A. and Dorrestein, Pieter C. and Duncan, Katherine R. and Egan, Joseph M. and Galey, Melissa M. and Haeckl, F.P. Jake and Hua, Alex and Hughes, Alison H. and Iskakova, Dasha and Khadilkar, Aswad and Lee, Jung-Ho and Lee, Sanghoon and LeGrow, Nicole and Liu, Dennis Y. and Macho, Jocelyn M. and McCaughey, Catherine S. and Medema, Marnix H. and Neupane, Ram P. and O’Donnell, Timothy J. and Paula, Jasmine S. and Sanchez, Laura M. and Shaikh, Anam F. and Soldatou, Sylvia and Terlouw, Barbara R. and Tran, Tuan Anh and Valentine, Mercia and van der Hooft, Justin J. J. and Vo, Duy A. and Wang, Mingxun and Wilson, Darryl and Zink, Katherine E. and Linington, Roger G. (2019) The Natural Products Atlas : an open access knowledge base for microbial natural products discovery. ACS Central Science, 5 (11). pp. 1824-1833. ISSN 2374-7951

Millán-Aguiñaga, Natalie and Soldatou, Sylvia and Brozio, Sarah and Munnoch, John T. and Howe, John and Hoskisson, Paul A. and Duncan, Katherine R. (2019) Awakening ancient polar actinobacteria : diversity, evolution and specialized metabolite potential. Microbiology, 165 (11). pp. 1169-1180. ISSN 1465-2080

Soldatou, Sylvia and Eldjarn, Grimur Hjorleifsson and Huerta-Uribe, Alejandro and Rogers, Simon and Duncan, Katherine (2019) Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery. FEMS Microbiology Letters, 366 (13). fnz142. ISSN 0378-1097

Hicks, Natalie and Liu, Xuan and Gregory, Richard and Kenny, John and Lucaci, Anita and Lenzi, Luca and Paterson, David M. and Duncan, Katherine R. (2018) Temperature driven changes in benthic bacterial diversity influences biogeochemical cycling in coastal sediments. Frontiers in Microbiology, 9. 1730. ISSN 1664-302X

Vallet, Marine and Vanbellingen, Quentin P. and Fu, Tingting and Le Caer, Jean-Pierre and Della-Negra, Serge and Touboul, David and Duncan, Katherine R. and Nay, Bastien and Brunelle, Alain and Prado, Soizic (2017) An integrative approach to decipher the chemical antagonism between the competing endophytes paraconiothyrium variabile and Bacillus subtilis. Journal of Natural Products, 80 (11). 2863–2873. ISSN 0163-3864

Buchholz, Holger H. and Duncan, Katherine R. (2017) Antarctic sponge associated microbial chemistry with biomedical relevance– the need for ecologically driven studies. Current Organic Chemistry, 21 (5). pp. 395-401. ISSN 1385-2728

Wang, Mingxun and Carver, Jeremy J and Phelan, Vanessa V and Sanchez, Laura M and Garg, Neha and Peng, Yao and Nguyen, Don Duy and Watrous, Jeramie and Kapono, Clifford A and Luzzatto-Knaan, Tal and Porto, Carla and Bouslimani, Amina and Melnik, Alexey V and Meehan, Michael J and Liu, Wei-Ting and Crüsemann, Max and Boudreau, Paul D and Esquenazi, Eduardo and Sandoval-Calderón, Mario and Kersten, Roland D and Pace, Laura A and Quinn, Robert A and Duncan, Katherine R and Hsu, Cheng-Chih and Floros, Dimitrios J and Gavilan, Ronnie G and Kleigrewe, Karin and Northen, Trent and Dutton, Rachel J and Parrot, Delphine and Carlson, Erin E and Aigle, Bertrand and Michelsen, Charlotte F and Jelsbak, Lars and Sohlenkamp, Christian and Pevzner, Pavel and Edlund, Anna and McLean, Jeffrey and Piel, Jörn and Murphy, Brian T and Gerwick, Lena and Liaw, Chih-Chuang and Yang, Yu-Liang and Humpf, Hans-Ulrich and Maansson, Maria and Keyzers, Robert A and Sims, Amy C and Johnson, Andrew R and Sidebottom, Ashley M and Sedio, Brian E and Klitgaard, Andreas and Larson, Charles B and Boya P, Cristopher A and Torres-Mendoza, Daniel and Gonzalez, David J and Silva, Denise B and Marques, Lucas M and Demarque, Daniel P and Pociute, Egle and O'Neill, Ellis C and Briand, Enora and Helfrich, Eric J N and Granatosky, Eve A and Glukhov, Evgenia and Ryffel, Florian and Houson, Hailey and Mohimani, Hosein and Kharbush, Jenan J and Zeng, Yi and Vorholt, Julia A and Kurita, Kenji L and Charusanti, Pep and McPhail, Kerry L and Nielsen, Kristian Fog and Vuong, Lisa and Elfeki, Maryam and Traxler, Matthew F and Engene, Niclas and Koyama, Nobuhiro and Vining, Oliver B and Baric, Ralph and Silva, Ricardo R and Mascuch, Samantha J and Tomasi, Sophie and Jenkins, Stefan and Macherla, Venkat and Hoffman, Thomas and Agarwal, Vinayak and Williams, Philip G and Dai, Jingqui and Neupane, Ram and Gurr, Joshua and Rodríguez, Andrés M C and Lamsa, Anne and Zhang, Chen and Dorrestein, Kathleen and Duggan, Brendan M and Almaliti, Jehad and Allard, Pierre-Marie and Phapale, Prasad and Nothias, Louis-Felix and Alexandrov, Theodore and Litaudon, Marc and Wolfender, Jean-Luc and Kyle, Jennifer E and Metz, Thomas O and Peryea, Tyler and Nguyen, Dac-Trung and VanLeer, Danielle and Shinn, Paul and Jadhav, Ajit and Müller, Rolf and Waters, Katrina M and Shi, Wenyuan and Liu, Xueting and Zhang, Lixin and Knight, Rob and Jensen, Paul R and Palsson, Bernhard Ø and Pogliano, Kit and Linington, Roger G and Gutiérrez, Marcelino and Lopes, Norberto P and Gerwick, William H and Moore, Bradley S and Dorrestein, Pieter C and Bandeira, Nuno (2016) Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nature Biotechnology, 34 (8). pp. 828-837. ISSN 1087-0156

Purves, Kevin and Macintyre, Lynsey and Brennan, Debra and Hreggviðsson, Guðmundur Ó. and Kuttner, Eva and Ásgeirsdóttir, Margrét E. and Young, Louise C. and Green, David H. and Edrada-Ebel, Ruangelie and Duncan, Katherine (2016) Using molecular networking for microbial secondary metabolite bioprospecting. Metabolites, 6 (1). 2. ISSN 2218-1989

Duncan, Katherine and Haltli, Bradley and Gill, Krista A and Kerr, Russell G (2014) Bioprospecting from marine sediments of New Brunswick, Canada : exploring the relationship between total bacterial diversity and actinobacteria diversity. Marine Drugs, 12 (2). pp. 899-925. ISSN 1660-3397