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Choua, Melinda and Heath, Mike R. and Bonachela, Juan A. (2021) Evolutionarily stable coevolution between a plastic lytic virus and its microbial host. Frontiers in Microbiology, 12. 637490. ISSN 1664-302X

Choua, Melinda and Heath, Michael R. and Speirs, Douglas C. and Bonachela, Juan A. (2020) The effect of viral plasticity on the persistence of host-virus systems. Journal of Theoretical Biology, 498. 110263. ISSN 0022-5193

Villegas, Pablo and Muñoz, Miguel A. and Bonachela, Juan A. (2020) Evolution in the Debian GNU/Linux software network : analogies and differences with gene regulatory networks. Journal of the Royal Society Interface, 17 (163). 20190845. ISSN 1742-5689

Choua, Melinda and Bonachela, Juan A. (2019) Ecological and evolutionary consequences of viral plasticity. American Naturalist, 193 (3). pp. 346-358. ISSN 0003-0147

Martínez-García, Ricardo and Nadell, Carey D. and Hartmann, Raimo and Drescher, Knut and Bonachela, Juan A. (2018) Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms. PLoS Computational Biology, 14 (4). e1006094. ISSN 1553-734X

Tarnita, Corina E. and Bonachela, Juan A. and Sheffer, Efrat and Guyton, Jennifer A. and Coverdale, Tyler C. and Long, Ryan A. and Pringle, Robert M. (2017) A theoretical foundation for multi-scale regular vegetation patterns. Nature, 541 (7637). pp. 398-401. ISSN 0028-0836

Garcia, Nathan S and Bonachela, Juan A and Martiny, Adam C (2016) Interactions between growth-dependent changes in cell size, nutrient supply and cellular elemental stoichiometry of marine Synechococcus. ISME Journal, 10 (11). pp. 2715-2724. ISSN 1751-7362

Bonachela, Juan A. and Klausmeier, Christopher A. and Edwards, Kyle and Litchman, Elena and Levin, Simon A. (2016) The role of phytoplankton diversity in the emergent oceanic stoichiometry. Journal of Plankton Research, 38 (4). pp. 1021-1035. ISSN 0142-7873

Mouginot, Céline and Zimmerman, Amy E. and Bonachela, Juan A. and Fredricks, Helen and Allison, Steven D. and Van Mooy, Benjamin A. S. and Martiny, Adam C. (2015) Resource allocation by the marine cyanobacterium Synechococcus WH8102 in response to different nutrient supply ratios. Limnology and Oceanography, 60 (5). pp. 1634-1641. ISSN 0024-3590

Villa Martín, Paula and Bonachela, Juan A. and Levin, Simon A. and Muñoz, Miguel A. (2015) Eluding catastrophic shifts. Proceedings of the National Academy of Sciences, 112 (15). E1828–E1836. ISSN 1091-6490

Bonachela, Juan A. and Pringle, Robert M. and Sheffer, Efrat and Coverdale, Tyler C. and Guyton, Jennifer A. and Caylor, Kelly K. and Levin, Simon A. and Tarnita, Corina E. (2015) Termite mounds can increase the robustness of dryland ecosystems to climatic change. Science, 347 (6222). pp. 651-655. ISSN 0036-8075

Lomas, Michael W. and Bonachela, Juan A. and Levin, Simon A. and Martiny, Adam C. (2014) Impact of ocean phytoplankton diversity on phosphate uptake. Proceedings of the National Academy of Sciences, 111 (49). pp. 17540-17545. ISSN 0027-8424

Bonachela, Juan A. and Levin, Simon A. (2014) Evolutionary comparison between viral lysis rate and latent period. Journal of Theoretical Biology, 345. pp. 32-42. ISSN 0022-5193

Villa Martín, Paula and Bonachela, Juan A. and Muñoz, Miguel A. (2014) Quenched disorder forbids discontinuous transitions in nonequilibrium low-dimensional systems. Physical Review E, 89 (1). 012145. ISSN 2470-0053

Bonachela, J. A. and Allison, S. D. and Martiny, A. C. and Levin, S. A. (2013) A model for variable phytoplankton stoichiometry based on cell protein regulation. Biogeosciences, 10 (6). pp. 4341-4356. ISSN 1726-4170

Bonachela, Juan A. and Muñoz, Miguel A. and Levin, Simon A. (2012) Patchiness and demographic noise in three ecological examples. Journal of Statistical Physics, 148 (4). pp. 724-740. ISSN 0022-4715

Bonachela, Juan A. and Raghib, Michael and Levin, Simon A. (2012) Correction for Bonachela et al., Dynamic model of flexible phytoplankton nutrient uptake. Proceedings of the National Academy of Sciences, 109 (8). 20633. ISSN 0027-8424

Bonachela, Juan A. and Raghib, Michael and Levin, Simon A. (2011) Dynamic model of flexible phytoplankton nutrient uptake. Proceedings of the National Academy of Sciences, 108 (51). pp. 20633-20638. ISSN 0027-8424

Fortuna, Miguel A. and Bonachela, Juan A. and Levin, Simon A. (2011) Evolution of a modular software network. Proceedings of the National Academy of Sciences, 108 (50). pp. 19985-19989. ISSN 0027-8424

Bonachela, Juan A. and Nadell, Carey D. and Xavier, João B. and Levin, Simon A. (2011) Universality in bacterial colonies. Journal of Statistical Physics, 144 (2). pp. 303-315. ISSN 0022-4715

Vazquez, Federico and Bonachela, Juan A. and López, Cristóbal and Muñoz, Miguel A. (2011) Temporal Griffiths phases. Physical Review Letters, 106 (23). 235702. ISSN 1079-7114

Bonachela, Juan A. and De Franciscis, Sebastiano and Torres, Joaquín J. and Muñoz, Miguel A. (2010) Self-organization without conservation : are neuronal avalanches generically critical? Journal of Statistical Mechanics: Theory and Experiment, 2010 (2). P02015. ISSN 1742-5468

Bonachela, Juan A. and Muñoz, Miguel A. (2009) Self-organization without conservation : true or just apparent scale-invariance? Journal of Statistical Mechanics: Theory and Experiment, 2009 (9). P09009. ISSN 1742-5468

Bonachela, Juan A. and Alava, Mikko and Muñoz, Miguel A. (2009) Cusps, self-organization, and absorbing states. Physical Review E, 79 (5). 050106. ISSN 2470-0053

Bonachela, Juan A. and Muñoz, Miguel A. (2009) Boundary-induced heterogeneous absorbing states. AIP Conference Proceedings, 1091. pp. 204-211. ISSN 1551-7616

Barato, A. C. and Bonachela, Juan A. and Fiore, C. E. and Hinrichsen, H. and Muñoz, Miguel A. (2009) Simplest nonequilibrium phase transition into an absorbing state. Physical Review E, 79 (4). 041130. ISSN 2470-0053

Bonachela, Juan A. and Muñoz, Miguel A. (2008) Confirming and extending the hypothesis of universality in sandpiles. Physical Review E, 78 (4). 041102. ISSN 2470-0053

Bonachela, Juan A. and Hinrichsen, Haye and Muñoz, Miguel A. (2008) Entropy estimates of small data sets. Journal of Physics A: Mathematical and Theoretical, 41 (20). 202001. ISSN 1751-8113

Bonachela Fajardo, Juan Antonio (2008) Universality in Self-Organized Criticality. PhD thesis, UNSPECIFIED.

Bonachela, Juan A. and Muñoz, Miguel A. (2007) How to discriminate easily between directed-percolation and Manna scaling. Physica A: Statistical Mechanics and its Applications, 384 (1). pp. 89-93. ISSN 0378-4371

Bonachela, Juan A. and Chaté, Hugues and Dornic, Ivan and Muñoz, Miguel A. (2007) Absorbing states and elastic interfaces in random media : two equivalent descriptions of self-organized criticality. Physical Review Letters, 98 (15). 155702. ISSN 1079-7114

Al Hammal, Omar and Bonachela, Juan A. and Muñoz, Miguel A. (2006) Absorbing state phase transitions with a non-accessible vacuum. Journal of Statistical Mechanics: Theory and Experiment, 2006 (12). P12007. ISSN 1742-5468

Bonachela, Juan A. and Ramasco, José J. and Chaté, Hugues and Dornic, Ivan and Muñoz, Miguel A. (2006) Sticky grains do not change the universality class of isotropic sandpiles. Physical Review E, 74 (5). 050102. ISSN 2470-0053