Browse by Author or creator

2021

Muir, Rhona and Forbes, Shareen and Birch, David J.S. and Vyshemirsky, Vladislav and Rolinski, Olaf J. (2021) Collagen glycation detected by its intrinsic fluorescence. Journal of Physical Chemistry B, 125 (39). 11058–11066. ISSN 1520-6106

2013

Milotti, Edoardo and Vyshemirsky, Vladislav and Sega, Michela and Stella, Sabrina and Chignola, Roberto (2013) Metabolic scaling in solid tumours. Scientific Reports, 3. 1938. ISSN 2045-2322

Milotti, Edoardo and Vyshemirsky, Vladislav and Sega, Michela and Stella, Sabrina and Dogo, Federico and Chignola, Roberto (2013) Computer-aided biophysical modeling : a quantitative approach to complex biological systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (3). pp. 805-810. ISSN 1545-5963

2012

Milotti, Edoardo and Vyshemirsky, Vladislav and Sega, Michela and Chignola, Roberto (2012) Interplay between distribution of live cells and growth dynamics of solid tumours. Scientific Reports, 2. 990. ISSN 2045-2322

Vyshemirsky, Vladislav (2012) Evidential model ranking without likelihoods. In: MASAMB, 2012-04-10 - 2012-04-11.

2011

Chignola, Roberto and Vyshemirsky, Vladislav and Farina, Marcello and Del Fabbro, Alessio and Milotti, Edoardo (2011) Modular model of TNFalpha cytotoxicity. Bioinformatics, 27 (13). pp. 1754-1757. ISSN 1367-4811

2010

Sturm, Oliver E. and Orton, Richard and Grindlay, Joan and Birtwistle, Marc and Vyshemirsky, Vladislav and Gilbert, David and Calder, Muffy and Pitt, Andrew and Kholodenko, Boris and Kolch, Walter (2010) The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier. Science Signaling, 3 (153). ra90.

Xu, Tian-Rui and Vyshemirsky, Vladislav and Gormand, Amelie and von Kriegsheim, Alex and Girolami, Mark and Baillie, George S. and Ketley, Dominic and Dunlop, Allan J. and Milligan, Graeme and Houslay, Miles D. and Kolch, Walter (2010) A correction to the research article titled: Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species. Science Signaling, 3 (134). -. er8.

Xu, Tian-Rui and Vyshemirsky, Vladislav and Gormand, Amelie and von Kriegsheim, Alex and Girolami, Mark and Baillie, G.S. and Ketley, Dominic and Dunlop, Allan J. and Milligan, G. and Houslay, Miles D. and Kolch, Walter (2010) Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species. Science Signaling, 3 (113). ra20.

Calder, Muffy and Gilmore, S. and Hillston, Jane and Vyshemirsky, Vladislav; Boca, Paul and Bowen, Jonathan P. and Siddiqi, Jawed, eds. (2010) Formal methods for biochemical signalling pathways. In: Formal Methods: State of the Art and New Directions. Springer, London, pp. 185-215. ISBN 9781848827363

Girolami, Mark and Calderhead, Ben and Vyshemirsky, Vladislav; (2010) System identification and model ranking: the Bayesian perspective. In: Learning and Inference in Computational Systems Biology. MIT Press, Cambridge, MA. ISBN 978-0-262-01386-4

2008

Vyshemirsky, Vladislav and Girolami, Mark (2008) BioBayes : a software package for Bayesian inference in systems biology. Bioinformatics, 24 (17). pp. 1933-1934. ISSN 1367-4811

Vyshemirsky, Vladislav and Girolami, Mark (2008) Bayesian ranking of biochemical system models. Bioinformatics, 24 (6). pp. 833-839. ISSN 1367-4811

2006

Calder, Muffy and Vyshemirsky, Vladislav and Gilbert, David and Orton, Richard (2006) Analysis of signalling pathways using continuous time Markov chains. Lecture Notes in Computer Science, 4220/2006. pp. 44-67. ISSN 0302-9743

Gilbert, David and Fuss, H. and Gu, Xu and Orton, Richard and Robinson, S. and Vyshemirsky, Vladislav and Kurth, M. J. and Downes, C. S. and Dubitzky, W. (2006) Computational methodologies for modelling, analysis and simulation of signalling networks. Briefings in Bioinformatics. pp. 339-353. ISSN 1467-5463

2005

Calder, Muffy and Vyshemirsky, Vladislav and Gilbert, David and Orton, Richard (2005) Analysis of signalling pathways using the prism model checker. In: CMSB'2005, 2005-04-03 - 2005-04-05.

Orton, Richard and Sturm, Oliver E. and Vyshemirsky, Vladislav and Calder, Muffy and Gilbert, David and Kolch, Walter (2005) Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway. Biochemical Journal, 392 (Pt 2). pp. 249-261. ISSN 0264-6021