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Article

Wahid, Maheen and Mackenzie, Graeme and Rooney, Liam M. and Greig, Justin C. and McConnell, Gail and Combet, Emilie and Gray, Stuart and Murray, James T. and Currie, Susan and Gould, Gwyn W. and Cunningham, Margaret R. (2024) From freeze to function : optimised cryopreservation and mitochondrial analysis workflow for skeletal muscle biopsies. BMC Methods, 1 (1). 16. ISSN 3004-8729

Pereira, Ana Rita and Rooney, Liam M and Gomes, Inês B and Simões, Manuel and McConnell, Gail (2024) The impact of methylparaben and chlorine on the architecture of Stenotrophomonas maltophilia biofilms. Science of the Total Environment, 951. 175646. ISSN 1879-1026

Bottura, Beatrice and Rooney, Liam and Feeney, Morgan and Hoskisson, Paul A. and McConnell, Gail (2024) Quantifying the fractal complexity of nutrient transport channels in Escherichia coli biofilms under varying cell shape and growth environment. Microbiology, 170 (11). 001511. ISSN 1465-2080

Rooney, Liam M. and Christopher, Jay and Watson, Ben and Susir Kumar, Yash and Copeland, Laura and Walker, Lewis D. and Foylan, Shannan and Amos, William B. and Bauer, Ralf and McConnell, Gail (2024) Printing, characterizing, and assessing transparent 3D printed lenses for optical imaging. Advanced Materials Technologies, 9 (15). 2400043. ISSN 2365-709X

Christopher, Jay and Donnachie, Mark and Rooney, Liam and McConnell, Gail and Uttamchandani, Deepak and Bauer, Ralf (2024) Using 3D printed optical elements for multifocal image scanning microscopy. Proceedings of SPIE, 12827. 1282702. ISSN 0277-786X

Christopher, Jay and Rooney, Liam M. and Donnachie, Mark and Uttamchandani, Deepak and McConnell, Gail and Bauer, Ralf (2024) Low-cost 3D printed lenses for brightfield and fluorescence microscopy. Biomedical Optics Express, 15 (4). pp. 2224-2237. ISSN 2156-7085

Rooney, Liam M. and Dupuy, Lionel X. and Hoskisson, Paul A. and McConnell, Gail (2024) Construction and characterisation of a structured, tuneable, and transparent 3D culture platform for soil bacteria. Microbiology, 170 (1). 001429. ISSN 1465-2080

Tinning, Peter W. and Schniete, Jana K. and Scrimgeour, Ross and Kölln, Lisa S. and Rooney, Liam M. and Bushell, Trevor J. and McConnell, Gail (2023) A simple image processing pipeline to sharpen topology maps in multi-wavelength interference microscopy. Optics Letters, 48 (5). pp. 1092-1095. ISSN 0146-9592

Rooney, Liam M. and Bottura, Beatrice and Baxter, Katherine and Amos, William B. and Hoskisson, Paul A. and McConnell, Gail (2023) Addressing multi-scale microbial challenges using the Mesolens. Journal of Microscopy, 296 (2). pp. 139-144. ISSN 0022-2720

Bottura, Beatrice and Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2022) Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness. Biofilm, 4. 100084. ISSN 2590-2075

Parra, Jonathan and Soldatou, Sylvia and Rooney, Liam M. and Duncan, Katherine R. (2021) Pseudonocardia abyssalis sp. nov. and Pseudonocardia oceani sp. nov., two novel actinomycetes isolated from the deep Southern Ocean. International Journal of Systematic and Evolutionary Microbiology, 71 (9). 005032. ISSN 1466-5026

Valli, Jessica and Garcia-Burgos, Adrian and Rooney, Liam M. and Vale de Melo e Oliveira, Beatriz and Duncan, Rory R. and Rickman, Colin (2021) Seeing beyond the limit : a guide to choosing the right super-resolution microscopy technique. Journal of Biological Chemistry, 297 (1). 100791. ISSN 1083-351X

Rooney, Liam M. and Amos, William B. and Hoskisson, Paul A. and McConnell, Gail (2020) Intra-colony channels in E. coli function as a nutrient uptake system. ISME Journal, 14 (10). pp. 2461-2473. ISSN 1751-7362

Rooney, Liam M. and Kölln, Lisa S. and Scrimgeour, Ross and Amos, William B. and Hoskisson, Paul A. and McConnell, Gail (2020) Three-dimensional observations of an aperiodic oscillatory gliding behavior in Myxococcus xanthus using confocal interference reflection microscopy. mSphere, 5 (1). e00846-19. ISSN 2379-5042

Conference or Workshop Item

Christopher, Jay and Rooney, Liam and Uttamchandani, Deepak and Bauer, Ralf (2023) Remote-refocus microscopy using a MEMS piston micromirror. In: Microscience Microscopy Congress 2023, 2023-07-03 - 2023-07-06, Manchester Central.

Christopher, Jay and Rooney, Liam and McConnell, Gail and Bauer, Ralf (2023) Using 3D printed optics for fluorescence microscopy. In: Microscience Microscopy Congress 2023, 2023-07-03 - 2023-07-06, Manchester Central.

Bottura, Beatrice and Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2022) Quantifying the effect of substrate composition on intra-colony channel morphology in E. coli biofilms using a custom-made open-source image analysis pipeline. In: European Light Microscopy Initiative 2022, 2022-06-07 - 2022-06-10, Turku, Finland.

Bottura, Beatrice and Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2022) Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness. In: Microbiology Society Annual Conference 2022, 2022-04-03 - 2022-04-07, Belfast International Conference Centre.

Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2019) Of microscopes and microbes : characterising a novel nutrient uptake system in Escherichia coli biofilms. In: FEMS 2019, 2019-07-07 - 2019-07-11, SEC Centre.

Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2019) Visualising the structure of bacterial communities : characterising a novel nutrient uptake system in Escherichia coli biofilms. In: Photonex, 2019-06-05 - 2019-06-05, Technology & Innovation Centre.

Rooney, Liam M. and McCann, Lee and Hoskisson, Paul A. and McConnell, Gail (2018) Applying the Mesolens to microbiology : investigating the structural organisation of bacterial biofilms. In: RMS Frontiers in Bioimaging 2018, 2018-06-27 - 2018-06-28, TIC, University of Strathclyde.

Rooney, Liam M. and McCann, Lee and Hoskisson, Paul A. and McConnell, Gail (2018) Applying the mesolens to microbiology : visualising biofilm architecture and substructure. In: 18th European Light Microscopy Initiative Meeting 2018, 2018-06-05 - 2018-06-08.

Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2018) Interference reflection microscopy shows novel insights to bacterial gliding motility. In: 18th European Light Microscopy Initiative Meeting 2018, 2018-06-05 - 2018-06-08.

Rooney, Liam M. and McCann, Lee and Hoskisson, Paul A. and McConnell, Gail (2018) Applying the mesolens to microbiology : visualising biofilm architecture and substructure. In: SULSA Antimicrobial Resistance Conference, 2018-04-26 - 2018-04-28, Technology and Innovation Centre.

Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2018) Interference reflection microscopy shows novel insights to bacterial gliding motility. In: EMBO Practical Course on Advanced Optical Microscopy for Cell Biology, 2018-04-04 - 2018-04-14, The Marine Biological Association.

Rooney, Liam M. and Hoskisson, Paul A. and McConnell, Gail (2018) Interference reflection microscopy shows novel insights to bacterial gliding motility. In: Spatiotemporal Organization of Bacterial Cells, 2018-03-14 - 2018-03-16.

Monograph

Baxter, Katherine and Rooney, Liam and Foylan, Shannan and Gould, Gwyn and McConnell, Gail (2024) Revealing the ultrastructure of live Candida albicans using stimulated emission depletion microscopy. Other. bioRxiv.

Christopher, Jay and Rooney, Liam M. and Donnachie, Mark and Uttamchandani, Deepak and McConnell, Gail and Bauer, Ralf (2023) Low-cost 3D printed lenses for brightfield and fluorescence microscopy. Other. bioRxiv, Cold Spring Harbor, NY.

Rooney, Liam M. and Christopher, Jay and Watson, Ben and Susir Kumar, Yash and Copeland, Laura and Walker, Lewis D. and Foylan, Shannan and Amos, William B. and Bauer, Ralf and McConnell, Gail (2023) Printing, characterising, and assessing transparent 3D printed lenses for optical imaging. Other. bioRxiv, Cold Spring Harbor, NY.

Bottura, Beatrice and Rooney, Liam and Feeney, Morgan and Hoskisson, Paul A. and McConnell, Gail (2023) Fractal complexity of Escherichia coli nutrient transport channels is influenced by cell shape and growth environment. Other. bioRxiv, Cold Spring Harbor, NY.

Bottura, Beatrice and Rooney, Liam M and Hoskisson, Paul A and McConnell, Gail (2022) Intra-colony channel morphology in Escherichia coli biofilms is governed by nutrient availability and substrate stiffness. Other. bioRxiv, Cold Spring Harbor, New York.