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Shah, Syed Ahmar and Mulholland, Rachel H and Wilkinson, Samantha and Katikireddi, Srinivasa Vittal and Pan, Jiafeng and Shi, Ting and Kerr, Steven and Agrawal, Uktarsh and Rudan, Igor and Simpson, Colin R and Stock, Sarah J and Macleod, John and Murray, Josephine-LK and McCowan, Colin and Ritchie, Lewis and Woolhouse, Mark and Sheikh, Aziz (2022) Impact on emergency and elective hospital-based care in Scotland over the first 12 months of the pandemic : interrupted time-series analysis of national lockdowns. Journal of the Royal Society of Medicine, 115 (11). pp. 429-438. ISSN 0141-0768

Guerendiain, Daniel and Grigorescu, Raluca and Kirk, Anna and Stevenson, Andrew and Holden, Matthew T. G. and Pan, Jiafeng and Kavanagh, Kim and Graham, Sheila V. and Cuschieri, Kate (2022) HPV status and HPV16 viral load in anal cancer and its association with clinical outcome. Cancer Medicine, 11 (22). pp. 4193-4203. ISSN 2045-7634

Calvert, Clara and Carruthers, Jade and Denny, Cheryl and Donaghy, Jack and Hillman, Sam and Hopcroft, Lisa E. M. and Hopkins, Leanne and Goulding, Anna and Lindsay, Laura and McLaughlin, Terry and Moore, Emily and Pan, Jiafeng and Taylor, Bob and Almaghrabi, Fatima and Auyeung, Bonnie and Bhaskaran, Krishnan and Gibbons, Cheryl L. and Katikireddi, Srinivasa Vittal and McCowan, Colin and Murray, Josie and O’Leary, Maureen and Ritchie, Lewis D. and Shah, Syed Ahmar and Simpson, Colin R. and Robertson, Chris and Sheikh, Aziz and Stock, Sarah J. and Wood, Rachael (2022) A population-based matched cohort study of early pregnancy outcomes following COVID-19 vaccination and SARS-CoV-2 infection. Nature Communications, 13 (1). 6124. ISSN 2041-1723

Shi, Ting and Pan, Jiafeng and Moore, Emily and Katikireddi, Srinivasa Vittal and Docherty, Annemarie B and Fenton, Lynda and McCowan, Colin and Agrawal, Utkarsh and Kerr, Steven and Shah, Syed Ahmar and Stock, Sarah J and Simpson, Colin R and Robertson, Chris and Sheikh, Aziz, Public Health Scotland and the EAVE II Collaborators (2022) Risk of COVID-19 hospitalizations among school-aged children in Scotland : a national incident cohort study. Journal of Global Health, 12. p. 5044. 05044. ISSN 2047-2978

Simpson, Colin R. and Kerr, Steven and Katikireddi, Srinivasa Vittal and McCowan, Colin and Ritchie, Lewis D. and Pan, Jiafeng and Stock, Sarah J and Rudan, Igor and Tsang, Ruby S. M. and de Lusignan, Simon and Hobbs, F. D. Richard and Akbari, Ashley and Lyons, Ronan A. and Robertson, Chris and Sheikh, Aziz (2022) Second-dose ChAdOx1 and BNT162b2 COVID-19 vaccines and thrombocytopenic, thromboembolic and hemorrhagic events in Scotland. Nature Communications, 13 (1). 4800. ISSN 2041-1723

Shi, Ting and Pan, Jiafeng and Vasileiou, Eleftheria and Robertson, Chris and Sheikh, Aziz, Public Health Scotland and the EAVE II Collaborators (2022) Risk of serious COVID-19 outcomes among adults with asthma in Scotland : a national incident cohort study. The Lancet Respiratory Medicine, 10 (4). pp. 347-354. ISSN 2213-2619

Stock, Sarah J and Carruthers, Jade and Calvert, Clara and Denny, Cheryl and Donaghy, Jack and Goulding, Anna and Hopcroft, Lisa E M and Hopkins, Leanne and McLaughlin, Terry and Pan, Jiafeng and Shi, Ting and Taylor, Bob and Agrawal, Utkarsh and Auyeung, Bonnie and Katikireddi, Srinivasa Vittal and McCowan, Colin and Murray, Josie and Simpson, Colin R and Robertson, Chris and Vasileiou, Eleftheria and Sheikh, Aziz and Wood, Rachael (2022) SARS-CoV-2 infection and COVID-19 vaccination rates in pregnant women in Scotland. Nature Medicine, 28 (3). pp. 504-512. ISSN 1078-8956

Kerr, Steven and Joy, Mark and Torabi, Fatemeh and Bedston, Stuart and Akbari, Ashley and Agrawal, Utkarsh and Beggs, Jillian and Bradley, Declan and Chuter, Antony and Docherty, Annemarie B. and Ford, David and Hobbs, Richard and Katikireddi, Srinivasa Vittal and Lowthian, Emily and de Lusignan, Simon and Lyons, Ronan and Marple, James and McCowan, Colin and McGagh, Dylan and McMenamin, Jim and Moore, Emily and Murray, Josephine-L. K. and Owen, Rhiannon K. and Pan, Jiafeng and Ritchie, Lewis and Shah, Syed Ahmar and Shi, Ting and Stock, Sarah and Tsang, Ruby S. M. and Vasileiou, Eleftheria and Woolhouse, Mark and Simpson, Colin R. and Robertson, Chris and Sheikh, Aziz (2022) First dose ChAdOx1 and BNT162b2 COVID-19 vaccinations and cerebral venous sinus thrombosis : a pooled self-controlled case series study of 11.6 million individuals in England, Scotland, and Wales. PLOS Medicine, 19 (2). e1003927. ISSN 1549-1277

Lu, Jianqiu and Li, Yuyuan and Mao, Xuerong and Pan, Jiafeng (2022) Stabilization of nonlinear hybrid stochastic delay systems by feedback control based on discrete-time state and mode observations. Applicable Analysis, 101 (3). pp. 1077-1100. ISSN 0003-6811

Stock, Sarah J. and Carruthers, Jade and Calvert, Clara and Denny, Cheryl and Donaghy, Jack and Goulding, Anna and Hopcroft, Lisa E. M. and Hopkins, Leanne and McLaughlin, Terry and Pan, Jiafeng and Shi, Ting and Taylor, Bob and Agrawal, Utkarsh and Auyeung, Bonnie and Katikireddi, Srinivasa Vittal and McCowan, Colin and Murray, Josie and Simpson, Colin R. and Robertson, Chris and Vasileiou, Eleftheria and Sheikh, Aziz and Wood, Rachael (2022) Author correction : SARS-CoV-2 infection and COVID-19 vaccination rates in pregnant women in Scotland. Nature Medicine, 28 (3). ISSN 1078-8956

Katikireddi, Srinivasa Vittal and Cerqueira-Silva, Thiago and Vasileiou, Eleftheria and Robertson, Chris and Amele, Sarah and Pan, Jiafeng and Taylor, Bob and Boaventura, Viviane and Werneck, Guilherme Loureiro and Flores-Ortiz, Renzo and Agrawal, Utkarsh and Docherty, Annemarie B and McCowan, Colin and McMenamin, Jim and Moore, Emily and Ritchie, Lewis D and Rudan, Igor and Shah, Syed Ahmar and Shi, Ting and Simpson, Colin R and Barreto, Mauricio L and Oliveira, Vinicius de Araujo and Barral-Netto, Manoel and Sheikh, Aziz (2022) Two-dose ChAdOx1 nCoV-19 vaccine protection against COVID-19 hospital admissions and deaths over time : a retrospective, population-based cohort study in Scotland and Brazil. Lancet, 399 (10319). pp. 25-35. ISSN 0140-6736

Patone, Martina and Handunnetthi, Lahiru and Saatci, Defne and Pan, Jiafeng and Katikireddi, Srinivasa Vittal and Razvi, Saif and Hunt, David and Mei, Xue W and Dixon, Sharon and Zaccardi, Francesco and Khunti, Kamlesh and Watkinson, Peter and Coupland, Carol A C and Doidge, James and Harrison, David A and Ravanan, Rommel and Sheikh, Aziz and Robertson, Chris and Hippisley-Cox, Julia (2021) Neurological complications after first dose of COVID-19 vaccines and SARS-CoV-2 infection. Nature Medicine, 27 (12). pp. 2144-2153. ISSN 1078-8956

Shi, Ting and Pan, Jiafeng and Katikireddi, Srinivasa Vittal and McCowan, Colin and Kerr, Steven and Agrawal, Utkarsh and Shah, Syed Ahmar and Simpson, Colin R and Ritchie, Lewis Duthie and Robertson, Chris and Sheikh, Aziz, Public Health Scotland and the EAVE II Collaborators (2021) Risk of COVID-19 hospital admission among children aged 5-17 years with asthma in Scotland : a national incident cohort study. The Lancet Respiratory Medicine. ISSN 2213-2619

Rana, Dikshyanta and Geue, Claudia and Baillie, Kelly and Pan, Jiafeng and Mueller, Tanja and Laskey, Jennifer and Bennie, Marion and Clarke, Julie and Jones, Robert and Brown, Ailsa and Wu, Olivia (2021) Healthcare costs for metastatic castration‑resistant prostate cancer patients treated with abiraterone or enzalutamide. PharmacoEconomics - Open. ISSN 2509-4254

Patone, Martina and Handunnetthi, Lahiru and Saatci, Defne and Pan, Jiafeng and Katikireddi, Srinivasa Vittal and Razvi, Saif and Hunt, David and Mei, Xue W and Dixon, Sharon and Zaccardi, Francesco and Khunti, Kamlesh and Watkinson, Peter and Coupland, Carol A C and Doidge, James and Harrison, David A and Ravanan, Rommel and Sheikh, Aziz and Robertson, Chris and Hippisley-Cox, Julia (2021) Publisher Correction : Neurological complications after first dose of COVID-19 vaccines and SARS-CoV-2 infection. Nature Medicine, 27. 2249. ISSN 1078-8956

Baillie, Kelly and Reed, Nicholas and Laskey, Jennifer and Pan, Jiafeng and Kavanagh, Kimberley and Bennie, Marion and Crearie, Christine and Mueller, Tanja and Sadozye, Azmat and Harrand, Rosie and Kerr, Ashleigh and Graham, Kathryn (2021) Neoadjuvant chemotherapy in locally advanced cervical cancer : real-world evidence data from the Cancer Medicines Outcomes Programme (CMOP). European Journal of Gynaecological Oncology, 42 (5). pp. 926-935. ISSN 0392-2936

Baillie, Kelly and Reed, Nicholas and Pan, Jiafeng and Laskey, Jennifer and Bennie, Marion and Crearie, Christine and Mueller, Tanja and Kavanagh, Kimberley and Siddiqui, Nadeem and Burton, Kevin and Telfer, John and Lindsay, Rhona and Shanbhag, Smruta and Harrand, Rosie and Sadozye, Azmat and Graham, Kathryn (2021) Retrospective cohort study of neoadjuvant chemotherapy followed by tailored surgery in locally advanced sphincter-threatening vulval cancer : an alternative to exenteration? European Journal of Gynaecological Oncology, 42 (5). pp. 917-925. ISSN 0392-2936

Manoukian, S. and Stewart, S. and Graves, N. and Mason, H. and Robertson, C. and Kennedy, S. and Pan, J. and Kavanagh, K. and Haahr, L. and Adil, M. and Dancer, S.J. and Cook, B. and Reilly, J. (2021) Bed-days and costs associated with the inpatient burden of healthcare-associated infection in the UK. Journal of Hospital Infection, 114. pp. 43-50. ISSN 1532-2939

Stewart, S. and Robertson, C. and Pan, J. and Kennedy, S. and Dancer, S. and Haahr, L. and Manoukian, S. and Mason, H. and Kavanagh, K. and Cook, B. and Reilly, J. (2021) Epidemiology of healthcare-associated infection reported from a hospital-wide incidence study : considerations for infection prevention and control planning. Journal of Hospital Infection, 114. pp. 10-22. ISSN 1532-2939

Manoukian, S. and Stewart, S. and Graves, N. and Mason, H. and Robertson, C. and Kennedy, S. and Pan, J. and Haahr, L. and Dancer, S. J. and Cook, B. and Reilly, J. (2021) Evaluating the post-discharge cost of healthcare-associated infection in NHS Scotland. Journal of Hospital Infection, 114. pp. 51-58. ISSN 1532-2939

Stewart, S. and Robertson, C. and Pan, J. and Kennedy, S. and Haahr, L. and Manoukian, S. and Mason, H. and Kavanagh, K. and Graves, N. and Dancer, S.J. and Cook, B. and Reilly, J. (2021) Impact of healthcare-associated infection on length of stay. Journal of Hospital Infection, 114. pp. 23-31. ISSN 1532-2939

Vasileiou, Eleftheria and Simpson, Colin R and Shi, Ting and Kerr, Steven and Agrawal, Utkarsh and Akbari, Ashley and Bedston, Stuart and Beggs, Jillian and Bradley, Declan and Chuter, Antony and de Lusignan, Simon and Docherty, Annemarie B and Ford, David and Hobbs, FD Richard and Joy, Mark and Katikireddi, Srinivasa Vittal and Marple, James and McCowan, Colin and McGagh, Dylan and McMenamin, Jim and Moore, Emily and Murray, Josephine LK and Pan, Jiafeng and Ritchie, Lewis and Shah, Syed Ahmar and Stock, Sarah and Torabi, Fatemeh and Tsang, Ruby SM and Wood, Rachael and Woolhouse, Mark and Robertson, Chris and Sheikh, Aziz (2021) Interim findings from first-dose mass COVID-19 vaccination roll-out and COVID-19 hospital admissions in Scotland : a national prospective cohort study. The Lancet, 397 (10285). pp. 1646-1657. ISSN 0140-6736

Cuschieri, K. and Pan, J. and O Donnell, M. and Kirkwood, K. and Kavanagh, K. and Pollock, K.G. and Bhatia, R. and Graham, S.V. and Wakeham, K. (2021) Penile cancer and the HPV attributable fraction in Scotland; A retrospective cohort study. Journal of Clinical Virology, 134. 104717. ISSN 1386-6532

Robertson, C. and Pan, J. and Kavanagh, K. and Ford, I. and McCowan, C. and Bennie, M. and Marwick, C. and Leanord, A. (2020) Cost burden of Clostridioides difficile infection to the health service : a retrospective cohort study in Scotland. Journal of Hospital Infection, 106 (3). pp. 554-561. ISSN 1532-2939

Stevenson, A. and Wakeham, K. and Pan, J. and Kavanagh, K. and Millan, D. and Bell, S. and McLellan, D. and Graham, S.V. and Cuschieri, K. (2020) Droplet digital PCR quantification suggests that higher viral load correlates with improved survival in HPV-positive oropharyngeal tumours. Journal of Clinical Virology, 129. 104505. ISSN 1386-6532

Baillie, Kelly and Mueller, Tanja and Pan, Jiafeng and Laskey, Jennifer and Bennie, Marion and Crearie, Christine and Kavanagh, Kimberley and Alvarez-Madrazo, Samantha and Morrison, David and Clarke, Julie and Keel, Aileen and Cameron, David and Wu, Olivia and Kurdi, Amanj and Jones, Robert J. (2020) Use of record linkage to evaluate treatment outcomes and trial eligibility in a real-world metastatic prostate cancer population in Scotland. Pharmacoepidemiology and Drug Safety, 29 (6). pp. 653-663. ISSN 1053-8569

Tikka, Theofano and Kavanagh, Kimberley and Lowit, Anja and Jiafeng, Pan and Burns, Harry and Nixon, Iain J. and Paleri, Vinidh and MacKenzie, Kenneth (2020) Head and neck cancer risk calculator (HaNC-RC) – v.2. adjustments and addition of symptoms and social history factors. Clinical Otolaryngology, 45 (3). pp. 380-388. ISSN 1749-4478

Wakeham, Katie and Pan, Jiafeng and Pollock, Kevin G and Millan, David and Bell, Sarah and McLellen, Douglas and McPhaden, Allan and Conway, David I and Graham, Sheila V and Kavanagh, Kimberley and Cuschieri, Kate (2019) A prospective cohort study of HPV-driven oropharyngeal cancers; implications for prognosis and immunisation. Clinical Oncology, 31 (9). pp. 132-142. ISSN 0936-6555

Pan, Jiafeng and Kavanagh, Kimberley and Cuschieri, Kate and Pollock, Kevin G and Gilbert, Duncan C and Millan, David and Bell, Sarah and Graham, Sheila V and Williams, Alistair R W and Cruickshank, Margaret E and Palmer, Tim and Wakeham, Katie (2019) Increased risk of HPV-associated genital cancers in men and women as a consequence of pre-invasive disease. International Journal of Cancer, 145 (2). pp. 427-434. ISSN 0020-7136

Baillie, Kelly and Crearie, Christine and Mueller, Tanja and Pan, Jiafeng and Jones, Rob and Bennie, Marion and Laskey, Jennifer (2018) "Real world" populations compared to clinical trials : can electronic record linkage be used to identify trial eligible patients? Journal of Oncology Pharmacy Practice, 24 (8 (Sup). ISSN 1477-092X

Stevenson, Andrew and Kavanagh, Kim and Pan, Jiafeng and Stevenson, Lynne and Griffin, Heather and Doorbar, John and Scott, Evelyn and Deeny, Miriam and Cuschieri, Kate and Graham, Sheila V. (2018) Risk stratification of cervical disease using detection of human papillomavirus (HPV) E4 protein and cellular MCM protein in clinical liquid based cytology samples. Journal of Clinical Virology, 108. pp. 19-25. ISSN 1386-6532

Baillie, Kelly and Mueller, Tanja and Pan, Jiafeng and Crearie, Christine and Laskey, Jennifer and Jones, Robert and Bennie, Marion (2018) Using existing NHS datasets to determine outcomes of cancer medicines : a feasibility study. In: 34th International Conference on Pharmacoepidemiology and Therapeutic Risk Management, 2018-08-22 - 2018-08-26, The Prague Congress Centre.

Soyiri, Ireneous N and Sheikh, Aziz and Reis, Stefan and Kavanagh, Kimberly and Vieno, Massimo and Clemens, Tom and Carnell, Edward J and Pan, Jiafeng and King, Abby and Beck, Rachel C and Ward, Hester J T and Dibben, Chris and Robertson, Chris and Simpson, Colin R (2018) Improving predictive asthma algorithms with modelled environment data for Scotland : an observational cohort study protocol. BMJ Open, 8 (5). e023289. ISSN 2044-6055

Li, Yuyuan and Lu, Jianqiu and Kou, Chunhai and Mao, Xuerong and Pan, Jiafeng (2018) Robust discrete-state-feedback stabilization of hybrid stochastic systems with time-varying delay based on Razumikhin technique. Statistics and Probability Letters. ISSN 0167-7152

Li, Yuyuan and Lu, Jianqiu and Kou, Chunhai and Mao, Xuerong and Pan, Jiafeng (2017) Robust stabilization of hybrid uncertain stochastic systems by discrete-time feedback control. Optimal Control Applications and Methods, 38 (5). pp. 847-859. ISSN 0143-2087

Cruickshank, M E and Pan, J. and Cotton, SC and Kavanagh, K and Robertson, C and Cuschieri, K and Cubie, H and Palmer, T and Pollock, KG (2017) Reduction in colposcopy workload and associated clinical activity following HPV catch-up vaccination programme in Scotland : an ecological study. BJOG: An International Journal of Obstetrics and Gynaecology, 124 (9). pp. 1386-1293. ISSN 1470-0328

Kavanagh, Kimberley and Pan, Jiafeng and Marwick, Charis and Davey, Peter and Wiuff, Camilla and Bryson, Scott and Robertson, Chris and Bennie, Marion (2017) Cumulative and temporal associations between antimicrobial prescribing and community-associated Clostridium difficile infection : population-based case control study using administrative data. Journal of Antimicrobial Chemotherapy, 72 (4). pp. 1193-1201. ISSN 0305-7453

Cai, Wugan and Pan, Jiafeng (2017) Stochastic differential equation models for the price of European CO2 emission allowances. Sustainability, 9 (2). ISSN 2071-1050

Conway, David I. and Robertson, Chris and Gray, Heather and Young, Linda and McDaid, Lisa M. and Winter, Andrew J. and Campbell, Christine and Pan, Jiafeng and Kavanagh, Kimberley and Kean, Sharon and Bhatia, Ramya and Cubie, Heather and Clarkson, Jan E. and Bagg, Jeremy and Pollock, Kevin G. and Cuschieri, Kate (2016) Human Papilloma Virus (HPV) Oral Prevalence in Scotland (HOPSCOTCH) : a feasibility study in dental settings. PLOS One, 11 (11). pp. 1-17. e0165847. ISSN 1932-6203

Bhatia, R and Kavanagh, K and Cubie, H and Serrano, I and Wennington, H and Hopkins, M and Pan, J and Pollock, KG and Palmer, TJ and Cuschieri, K (2016) Use of HPV testing for cervical screening in vaccinated women - insights from the SHEVa (Scottish HPV Prevalence in Vaccinated Women) study. International Journal of Cancer.

Cameron, Ross L and Kavanagh, Kimberley and Pan, Jiafeng and Love, John and Cuschieri, Kate and Robertson, Chris and Ahmed, Syed and Palmer, Timothy and Pollock, Kevin G.J. (2016) Continued reduction in HPV prevalence and early evidence of herd immunity following the human papillomavirus vaccination programme in Scotland. Emerging Infectious Diseases, 22 (1). pp. 56-64. ISSN 1080-6059

Gray, Alison and Pan, Jiafeng and Greenhalgh, David and Mao, Xuerong (2015) Parameter estimation for the stochastic SIS epidemic model. In: 26th Numerical Analysis Conference, 2015-06-23 - 2015-06-26, University of Strathclyde. (Unpublished)

Pan, Jiafeng and Gray, Alison and Greenhalgh, David and Mao, Xuerong (2014) Parameter estimation for the stochastic SIS epidemic model. Statistical Inference for Stochastic Processes, 17 (1). pp. 75-98. ISSN 1387-0874

Gray, Alison and Greenhalgh, David and Mao, Xuerong and Pan, Jiafeng (2012) The SIS epidemic model with Markovian switching. Journal of Mathematical Analysis and Applications, 394 (2). pp. 496-516. ISSN 0022-247X

Greenhalgh, David and Gray, Alison and Mao, Xuerong and Pan, Jiafeng (2012) Limiting behaviour of an SIS epidemic model with environmental stochasticity. In: 13th WSEAS International Conference on Mathematics and Computers in Biology and Chemistry, 2012-06-13 - 2012-09-15. (Unpublished)

Pan, Jiafeng and Gray, Alison and Greenhalgh, David and Mao, Xuerong (2012) Estimation of parameters for the SDE SIS epidemic model. In: Workshop on Stochastic Modelling in Ecosystems, 2012-06-11 - 2012-06-12. (Unpublished)

Gray, Alison and Greenhalgh, David and Mao, Xuerong and Pan, Jiafeng (2012) SDE SIS epidemic models. In: Workshop on Stochastic Modelling in Ecosystems, 2012-06-11 - 2012-06-12. (Unpublished)

Gray, Alison and Greenhalgh, David and Hu, L. and Mao, Xuerong and Pan, Jiafeng (2011) A stochastic differential equation SIS epidemic model. SIAM Journal on Applied Mathematics, 71 (3). pp. 876-902. ISSN 1095-712X