Strategy for genome sequencing analysis and assembly for comparative genomics of pseudomonas genomes

Tools

Jeukens, Julie and Boyle, Brian and Tucker, Nicholas P and Levesque, Roger C; Filloux, Alain and Ramos, Juan-Luis, eds. (2014) Strategy for genome sequencing analysis and assembly for comparative genomics of pseudomonas genomes. In: Pseudomonas Methods and Protocols. Methods in Molecular Biology . Springer, New York, pp. 565-577. ISBN 9781493904730 (https://doi.org/10.1007/978-1-4939-0473-0_43)

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Abstract

Bacterial genome sequencing has developed rapidly in the last decade and has become a primary method for analyzing the genomic basis of differences in phenotype between strains as well as being a valuable tool for public health epidemiology. This chapter provides a comprehensive workflow for bacterial genome sequencing from experimental design to data suitable for comparative genomics analysis, while mainly focusing on the challenges associated with genome assembly. This approach was successfully applied to 19 Pseudomonas aeruginosa genomes from phenotypically distinct strains.

ORCID iDs

Jeukens, Julie, Boyle, Brian, Tucker, Nicholas P ORCID logoORCID: https://orcid.org/0000-0002-6331-3704 and Levesque, Roger C; Filloux, Alain and Ramos, Juan-Luis
CORE (COnnecting REpositories)