Compact and robust deep learning architecture for fluorescence lifetime imaging and FPGA implementation

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Zang, Zhenya and Xiao, Dong and Wang, Quan and Jiao, Ziao and Chen, Yu and Li, David Day Uei (2023) Compact and robust deep learning architecture for fluorescence lifetime imaging and FPGA implementation. Methods and Applications in Fluorescence, 11 (2). 025002. ISSN 2050-6120 (https://doi.org/10.1088/2050-6120/acc0d9)

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Abstract

This paper reports a bespoke adder-based deep learning network for time-domain fluorescence lifetime imaging (FLIM). By leveraging the l1-norm extraction method, we propose a 1-D Fluorescence Lifetime AdderNet (FLAN) without multiplication-based convolutions to reduce the computational complexity. Further, we compressed fluorescence decays in temporal dimension using a log-scale merging technique to discard redundant temporal information derived as log-scaling FLAN (FLAN+LS). FLAN+LS achieves 0.11 and 0.23 compression ratios compared with FLAN and a conventional 1-D convolutional neural network (1-D CNN) while maintaining high accuracy in retrieving lifetimes. We extensively evaluated FLAN and FLAN+LS using synthetic and real data. A traditional fitting method and other non-fitting, high-accuracy algorithms were compared with our networks for synthetic data. Our networks attained a minor reconstruction error in different photon-count scenarios. For real data, we used fluorescent beads' data acquired by a confocal microscope to validate the effectiveness of real fluorophores, and our networks can differentiate beads with different lifetimes. Additionally, we implemented the network architecture on a field-programmable gate array (FPGA) with a post-quantization technique to shorten the bit-width, thereby improving computing efficiency. FLAN+LS on hardware achieves the highest computing efficiency compared to 1-D CNN and FLAN. We also discussed the applicability of our network and hardware architecture for other time-resolved biomedical applications using photon-efficient, time-resolved sensors

ORCID iDs

Zang, Zhenya, Xiao, Dong, Wang, Quan, Jiao, Ziao, Chen, Yu and Li, David Day Uei ORCID logoORCID: https://orcid.org/0000-0002-6401-4263;
CORE (COnnecting REpositories)