cazy_webscraper : For creating a local CAZy database

Hobbs, Emma and Gloster, Tracey and Chapman, Sean and Pritchard, Leighton (2021) cazy_webscraper : For creating a local CAZy database. In: Microbiology Society Annual Conference 2021, 2021-04-26 - 2021-04-30, Online. (https://doi.org/10.6084/m9.figshare.14370860.v3)

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Abstract

Carbohydrate Active enZymes (CAZymes) are pivotal in pathogen recognition, signalling, structure and energy metabolism. CAZy (www.cazy.org) is the most comprehensive CAZyme database, but it does not provide methods for automating data retrieval or submitting sequences for annotation. cazy_webscraper retrieves user-specified datasets from CAZy, producing a local SQL database enabling thorough interrogation of the data. cazy_webscraper can also retrieve protein sequences from GenBank and download structure files from RCSB PDB.

ORCID iDs

Pritchard, Leighton ORCID: https://orcid.org/0000-0002-8392-2822

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• Item metadata

  Item type:	Conference or Workshop Item(Poster)
  ID code:	76079
  Dates:	Date Event 4 April 2021 Published
  Subjects:	Science > Microbiology
  Department:	Faculty of Science > Strathclyde Institute of Pharmacy and Biomedical Sciences
  Depositing user:	Pure Administrator
  Date deposited:	14 Apr 2021 13:50
  Last modified:	12 Dec 2024 16:35
  URI:	https://strathprints.strath.ac.uk/id/eprint/76079