Easily phylotyping E. coli via the EzClermont web app and command-line tool

Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2019) Easily phylotyping E. coli via the EzClermont web app and command-line tool. Working paper. bioRxiv, Cold Spring Harbor, NY.

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    Abstract

    The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.

    Creators(s): Waters, Nicholas R., Abram, Florence, Brennan, Fiona, Holmes, Ashleigh and Pritchard, Leighton ORCID logoORCID: https://orcid.org/0000-0002-8392-2822;
    Item type:Monograph(Working paper)
    ID code:72370
    Keywords:phylotyping, Escherichia coli, Clermont PCR method, Microbiology, Immunology and Microbiology(all)
    Subjects:Science > Microbiology
    Department:Faculty of Science > Strathclyde Institute of Pharmacy and Biomedical Sciences
    Depositing user: Pure Administrator
    Date deposited:14 May 2020 10:02
    Last modified:17 Oct 2020 04:26
    URI:https://strathprints.strath.ac.uk/id/eprint/72370
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