Easily phylotyping E. coli via the EzClermont web app and command-line tool

Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2019) Easily phylotyping E. coli via the EzClermont web app and command-line tool. Preprint / Working Paper. bioRxiv, Cold Spring Harbor, NY. (https://doi.org/10.1101/317610)

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Abstract

The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.

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• Item metadata

  Item type:	Monograph(Preprint / Working Paper)
  ID code:	72370
  Dates:	Date Event 31 December 2019 Published
  Subjects:	Science > Microbiology
  Department:	Faculty of Science > Strathclyde Institute of Pharmacy and Biomedical Sciences
  Depositing user:	Pure Administrator
  Date deposited:	14 May 2020 10:02
  Last modified:	09 Apr 2024 04:44
  URI:	https://strathprints.strath.ac.uk/id/eprint/72370