Easily phylotyping E. coli via the EzClermont web app and command-line tool
Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2019) Easily phylotyping E. coli via the EzClermont web app and command-line tool. Working paper. bioRxiv, Cold Spring Harbor, NY.
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Official URL: https://doi.org/10.1101/317610
Abstract
The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.
Creators(s): |
Waters, Nicholas R., Abram, Florence, Brennan, Fiona, Holmes, Ashleigh and Pritchard, Leighton ![]() | Item type: | Monograph(Working paper) |
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ID code: | 72370 |
Keywords: | phylotyping, Escherichia coli, Clermont PCR method, Microbiology, Immunology and Microbiology(all) |
Subjects: | Science > Microbiology |
Department: | Faculty of Science > Strathclyde Institute of Pharmacy and Biomedical Sciences |
Depositing user: | Pure Administrator |
Date deposited: | 14 May 2020 10:02 |
Last modified: | 20 Jan 2021 16:26 |
URI: | https://strathprints.strath.ac.uk/id/eprint/72370 |
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