Easily phylotyping E. coli via the EzClermont web app and command-line tool

Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2019) Easily phylotyping E. coli via the EzClermont web app and command-line tool. Working paper. bioRxiv, Cold Spring Harbor, NY.

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    Abstract

    The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.

    ORCID iDs

    Waters, Nicholas R., Abram, Florence, Brennan, Fiona, Holmes, Ashleigh and Pritchard, Leighton ORCID logoORCID: https://orcid.org/0000-0002-8392-2822;
    • Item type:Monograph(Working paper)
      ID code:72370
      Dates:
      Date
      Event
      31 December 2019
      Published
      Keywords:phylotyping, Escherichia coli, Clermont PCR method, Microbiology, Immunology and Microbiology(all)
      Subjects:Science > Microbiology
      Department:Faculty of Science > Strathclyde Institute of Pharmacy and Biomedical Sciences
      Depositing user: Pure Administrator
      Date deposited:14 May 2020 10:02
      Last modified:24 May 2021 00:53
      URI:https://strathprints.strath.ac.uk/id/eprint/72370
    CORE (COnnecting REpositories)