Easily phylotyping E. coli via the EzClermont web app and command-line tool

Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2019) Easily phylotyping E. coli via the EzClermont web app and command-line tool. Preprint / Working Paper. bioRxiv, Cold Spring Harbor, NY. (https://doi.org/10.1101/317610)

[thumbnail of Waters-etal-bioRxiv-2019-Easily-phylotyping-E-coli-via-the-EzClermont-web-app-and-command-line-tool]
Preview
 Text. Filename: Waters_etal_bioRxiv_2019_Easily_phylotyping_E_coli_via_the_EzClermont_web_app_and_command_line_tool.pdf
Final Published Version
License: Creative Commons Attribution 4.0 logo
Download (251kB)| Preview

Abstract

The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.

ORCID iDs

Waters, Nicholas R., Abram, Florence, Brennan, Fiona, Holmes, Ashleigh and Pritchard, Leighton ORCID logoORCID: https://orcid.org/0000-0002-8392-2822;
CORE (COnnecting REpositories)