Easily phylotyping E. coli via the EzClermont web app and command-line tool
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Waters, Nicholas R. and Abram, Florence and Brennan, Fiona and Holmes, Ashleigh and Pritchard, Leighton (2020) Easily phylotyping E. coli via the EzClermont web app and command-line tool. Access Microbiology, 2 (9). ISSN 2516-8290 (https://doi.org/10.1099/acmi.0.000143)
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Abstract
The Clermont PCR method of phylotyping Escherichia coli has remained a useful classification scheme despite the proliferation of higher-resolution sequence typing schemes. We have implemented an in silico Clermont PCR method as both a web app and as a command-line tool to allow researchers to easily apply this phylotyping scheme to genome assemblies easily.
ORCID iDs
Waters, Nicholas R., Abram, Florence, Brennan, Fiona, Holmes, Ashleigh and Pritchard, Leighton ORCID: https://orcid.org/0000-0002-8392-2822;-
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Item type: Article ID code: 75468 Dates: DateEvent19 June 2020Published20 May 2020Accepted9 January 2020SubmittedSubjects: Medicine > Pharmacy and materia medica Department: Faculty of Science > Strathclyde Institute of Pharmacy and Biomedical Sciences Depositing user: Pure Administrator Date deposited: 17 Feb 2021 10:51 Last modified: 11 Nov 2024 12:39 Related URLs: URI: https://strathprints.strath.ac.uk/id/eprint/75468
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