Picture of neon light reading 'Open'

Discover open research at Strathprints as part of International Open Access Week!

23-29 October 2017 is International Open Access Week. The Strathprints institutional repository is a digital archive of Open Access research outputs, all produced by University of Strathclyde researchers.

Explore recent world leading Open Access research content this Open Access Week from across Strathclyde's many research active faculties: Engineering, Science, Humanities, Arts & Social Sciences and Strathclyde Business School.

Explore all Strathclyde Open Access research outputs...

Non-negative matrix factorisation for network reordering

Lee, Clare and Higham, Desmond and Crowther, D. and Vass, J. Keith (2010) Non-negative matrix factorisation for network reordering. Monografias de la Real Academia de Ciencias de Zaragoza, 33. pp. 39-53.

Full text not available in this repository. Request a copy from the Strathclyde author

Abstract

Non-negative matrix factorisation covers a variety of algorithms that attempt to represent a given, large, data matrix as a sum of low rank matrices with a prescribed sign pattern. There are intuitave advantages to this approach, but also theoretical and computational challenges. In this exploratory paper we investigate the use of non-negative matrix factorisation algorithms as a means to reorder the nodes in a large network. This gives a set of alternatives to the more traditional approach of using the singular value decomposition. We describe and implement a range of recently proposed algorithms and evaluate their performance on synthetically constructed test data and on a real data set arising in cancer research.