Picture of a black hole

Strathclyde Open Access research that creates ripples...

The Strathprints institutional repository is a digital archive of University of Strathclyde's Open Access research outputs. Strathprints provides access to thousands of research papers by University of Strathclyde researchers, including by Strathclyde physicists involved in observing gravitational waves and black hole mergers as part of the Laser Interferometer Gravitational-Wave Observatory (LIGO) - but also other internationally significant research from the Department of Physics. Discover why Strathclyde's physics research is making ripples...

Strathprints also exposes world leading research from the Faculties of Science, Engineering, Humanities & Social Sciences, and from the Strathclyde Business School.

Discover more...

GeneRank: using search engine technology for the analysis of microarray experiments

Morrison, J.L. and Breitling, R. and Higham, D.J. and Gilbert, D.R. (2005) GeneRank: using search engine technology for the analysis of microarray experiments. BMC Bioinformatics, 6 (1). p. 233.

[img]
Preview
PDF (strathprints002243.pdf)
strathprints002243.pdf

Download (607kB) | Preview

Abstract

Interpretation of simple microarray experiments is usually based on the fold-change of gene expression between a reference and a 'treated' sample where the treatment can be of many types from drug exposure to genetic variation. Interpretation of the results usually combines lists of differentially expressed genes with previous knowledge about their biological function. Here we evaluate a method - based on the PageRank algorithm employed by the popular search engine Google - that tries to automate some of this procedure to generate prioritized gene lists by exploiting biological background information.